myRT

myRT report for GCA_003432035.1_ASM343203v1

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Seq: QOHO01000146.1 Clostridium sp. PI-S10-A1B AIB_contig_146, whole genome shotgun sequence (2739 bp)
Overview 1 RT 1: 394-1773 bp Neighborhood of RT #1 [394, 2606] RVT-GII Feature: gene Location: 394-633 bp Feature: gene Location: 699-2606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1029-1773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 029-1 773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QOHO01000024.1 Clostridium sp. PI-S10-A1B AIB_contig_24, whole genome shotgun sequence (53167 bp)
Overview 1 RT 1: 29498-34741 bp Neighborhood of RT #1 [29498, 34776] DUF3837 RVT-GII GIIM AcrR COG2936 Feature: gene Location: 29498-29806 bp Feature: domain Description: DUF3837 Location: 29501-29801 bp Feature: domain Description: DUF3837 Location: 2 9501-2 9801 bp Feature: gene Location: 29942-30082 bp Feature: gene Location: 30297-31694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30618-31242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30618-312 42 bp Feature: domain Description: GIIM Note: maturase Location: 31299-31518 bp Feature: domain Description: GIIM Note: maturase Location: 312 99-31518 bp Feature: gene Location: 32138-32833 bp Feature: domain Description: AcrR Location: 32174-32513 bp Feature: domain Description: AcrR Location: 32 174-32 513 bp Feature: gene Location: 33025-34776 bp Feature: domain Description: COG2936 Location: 33202-34741 bp Feature: domain Description: COG2 936 Location: 332 02 -34741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3837 (pfam12939), RVT-GII, GIIM (pfam08388), AcrR (COG1309), COG2936 (Predicted acyl esterase )

Seq: QOHO01000034.1 Clostridium sp. PI-S10-A1B AIB_contig_34, whole genome shotgun sequence (58105 bp)
Overview 1 RT 1: 56171-57424 bp Neighborhood of RT #1 [56171, 57663] HTH_19 RVT-Retrons Feature: gene Location: 56171-56347 bp Feature: gene Location: 56435-56725 bp Feature: domain Description: HTH_19 Location: 56444-56618 bp Feature: domain Description: HTH_19 Location: 56444-56618 bp Feature: gene Location: 56728-57663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56875-57424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56875-57424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_19 (pfam12844), RVT-Retrons

Seq: QOHO01000040.1 Clostridium sp. PI-S10-A1B AIB_contig_40, whole genome shotgun sequence (1893 bp)
Overview 1 RT 1: 83-1864 bp Neighborhood of RT #1 [83, 1864] GIIM RVT-GII Feature: gene Location: 83-499 bp Feature: domain Description: GIIM Note: maturase Location: 110-278 bp Feature: domain Description: GIIM Note: maturase Location: 110-278 bp Feature: gene Location: 631-1386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 832-1375 bp Feature: gene Location: 1458-1634 bp Feature: gene Location: 1667-1864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QOHO01000046.1 Clostridium sp. PI-S10-A1B AIB_contig_46, whole genome shotgun sequence (1373 bp)
Overview 1 RT 1: 367-1258 bp Neighborhood of RT #1 [367, 1278] RVT-GII Feature: gene Location: 367-1278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718-1258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 718-125 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QOHO01000054.1 Clostridium sp. PI-S10-A1B AIB_contig_54, whole genome shotgun sequence (9838 bp)
Overview 1 RT 1: 2-4332 bp Neighborhood of RT #1 [2, 4442] RVT-GII GIIM CAP_ED HTH_Crp_2 COG1342 Nitro_FeMo-Co Feature: gene Location: 2-148 bp Feature: gene Location: 282-944 bp Feature: gene Location: 1015-2427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136 6 -1987 bp Feature: domain Description: GIIM Note: maturase Location: 2041-2266 bp Feature: domain Description: GIIM Note: maturase Location: 2041-226 6 bp Feature: gene Location: 2880-3632 bp Feature: domain Description: CAP_ED Location: 3015-3330 bp Feature: domain Description: CAP_ED Location: 3015-3330 bp Feature: domain Description: HTH_Crp_2 Location: 3426-3618 bp Feature: domain Description: HTH_Crp_2 Location: 3426 -36 18 bp Feature: gene Location: 3672-4442 bp Feature: domain Description: COG1342 Location: 3675-3954 bp Feature: domain Description: COG1342 Location: 36 75-3954 bp Feature: domain Description: Nitro_FeMo-Co Location: 4077-4332 bp Feature: domain Description: Nitro_FeMo-Co Location: 4077-4332 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CAP_ED (cl00047), HTH_Crp_2 (pfam13545), COG1342 (Predicted DNA-binding protein, UPF0251 family ), Nitro_FeMo-Co (pfam02579)