myRT

myRT report for GCA_003433765.1_ASM343376v1

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Seq: QVEN01000001.1 [Clostridium] clostridioforme strain AM07-19 AM07-19.Scaf1, whole genome shotgun sequence (1317630 bp)
Overview 1 RT 1: 36164-39829 bp Neighborhood of RT #1 [36164, 39849] DDE_5 RVT-GII GIIM RVT-GII MglA Feature: gene Location: 36164-36796 bp Feature: domain Description: DDE_5 Location: 36320-36686 bp Feature: domain Description: DDE_5 Location: 36320-36686 bp Feature: gene Location: 37014-37151 bp Feature: gene Location: 37278-37742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37284-37374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37284-37374 bp Feature: domain Description: GIIM Note: maturase Location: 37434-37659 bp Feature: domain Description: GIIM Note: maturase Location: 37434-37659 bp Feature: gene Location: 37823-38320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38189-38264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 381 89-38264 bp Feature: gene Location: 38846-39055 bp Feature: gene Location: 39055-39849 bp Feature: domain Description: MglA Location: 39097-39829 bp Feature: domain Description: MglA Location: 39097-39829 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), MglA (COG1129)

Seq: QVEN01000019.1 [Clostridium] clostridioforme strain AM07-19 AM07-19.Scaf19, whole genome shotgun sequence (73719 bp)
Overview 1 RT 1: 61535-69224 bp Neighborhood of RT #1 [61535, 69224] TcpE AAA_10 RVT-GII AAA_10 Feature: gene Location: 61535-61933 bp Feature: domain Description: TcpE Location: 61553-61850 bp Feature: domain Description: TcpE Location: 61553-61850 bp Feature: gene Location: 61911-63461 bp Feature: domain Description: AAA_10 Location: 63240-63423 bp Feature: domain Description: AAA_10 Location: 632 40-6342 3 bp Feature: gene Location: 64158-65984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64458-65157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64458-65157 bp Feature: gene Location: 66202-67041 bp Feature: domain Description: AAA_10 Location: 66205-67003 bp Feature: domain Description: AAA_10 Location: 662 05-67003 bp Feature: gene Location: 67041-69224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII

Seq: QVEN01000002.1 [Clostridium] clostridioforme strain AM07-19 AM07-19.Scaf2, whole genome shotgun sequence (1024025 bp)
Overview 1 RT 1: 20742-25015 bp 2 RT 2: 96503-102034 bp Neighborhood of RT #1 [20742, 25047] IMPase RVT-GII GIIM sigma70-ECF HTH_16 Neighborhood of RT #2 [96503, 102075] RVT-GII GIIM COG3666 DDE_Tnp_1_6 Feature: gene Location: 20742-21515 bp Feature: domain Description: IMPase Location: 20811-21468 bp Feature: domain Description: IMPase Location: 20811-21468 bp Feature: gene Location: 22428-22565 bp Feature: gene Location: 22921-24225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23122-23740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 122-23 740 bp Feature: domain Description: GIIM Note: maturase Location: 23794-24004 bp Feature: domain Description: GIIM Note: maturase Location: 23 794-24004 bp Feature: gene Location: 24411-24851 bp Feature: domain Description: sigma70-ECF Location: 24435-24825 bp Feature: domain Description: sigma70-ECF Location: 2443 5-24825 bp Feature: gene Location: 24841-25047 bp Feature: domain Description: HTH_16 Location: 24856-25015 bp Feature: domain Description: HTH_16 Location: 24856-25015 bp Feature: gene Location: 96503-98527 bp Feature: gene Location: 98589-98744 bp Feature: gene Location: 99229-100569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99502-100117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 99502-100117 bp Feature: domain Description: GIIM Note: maturase Location: 100177-100396 bp Feature: domain Description: GIIM Note: maturase Location: 100177-1003 96 bp Feature: gene Location: 100672-101145 bp Feature: domain Description: COG3666 Location: 100696-101131 bp Feature: domain Description: COG3 666 Location: 100696-10113 1 bp Feature: gene Location: 101200-102075 bp Feature: domain Description: DDE_Tnp_1_6 Location: 101683-102034 bp Feature: domain Description: DDE_Tnp_1_6 Location: 101683 -10203 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IMPase (cd01639), RVT-GII, GIIM (pfam08388), sigma70-ECF (TIGR02937), HTH_16 (pfam12645), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751)

Seq: QVEN01000003.1 [Clostridium] clostridioforme strain AM07-19 AM07-19.Scaf3, whole genome shotgun sequence (798800 bp)
Overview 1 RT 1: 246815-250961 bp Neighborhood of RT #1 [246815, 250961] UgpA UgpE RVT-Retrons NAT_SF YoaP Feature: gene Location: 246815-247693 bp Feature: domain Description: UgpA Location: 246833-247679 bp Feature: domain Description: UgpA Location: 24 6833-24 7679 bp Feature: gene Location: 247708-248541 bp Feature: domain Description: UgpE Location: 247723-248536 bp Feature: domain Description: UgpE Location: 24 7723-24 8536 bp Feature: gene Location: 248963-249970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 249128-249683 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24 9128-24 9683 bp Feature: gene Location: 249982-250725 bp Feature: domain Description: NAT_SF Location: 250189-250306 bp Feature: domain Description: NAT_SF Location: 250189-250306 bp Feature: domain Description: YoaP Location: 250588-250714 bp Feature: domain Description: YoaP Location: 250588-250714 bp Feature: gene Location: 250797-250961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), UgpE (COG0395), RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268)

Seq: QVEN01000038.1 [Clostridium] clostridioforme strain AM07-19 AM07-19.Scaf38, whole genome shotgun sequence (2590 bp)
Overview 1 RT 1: 105-2398 bp Neighborhood of RT #1 [105, 2398] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: domain Description: Intron_maturas2 Location: 1272-1587 bp Feature: domain Description: Intron_maturas2 Location: 1272-15 87 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: gene Location: 2183-2398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QVEN01000005.1 [Clostridium] clostridioforme strain AM07-19 AM07-19.Scaf5, whole genome shotgun sequence (334726 bp)
Overview 1 RT 1: 329243-333771 bp Neighborhood of RT #1 [329243, 333771] RVT-GII Intron_maturas2 HNHc VirD4 Feature: gene Location: 329243-329749 bp Feature: gene Location: 330004-330270 bp Feature: gene Location: 330309-332126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330573-331392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330573-331392 bp Feature: domain Description: Intron_maturas2 Location: 331464-331770 bp Feature: domain Description: Intron_maturas2 Location: 33146 4-331770 bp Feature: domain Description: HNHc Note: nucleases Location: 331947-332091 bp Feature: domain Description: HNHc Note: nucleases Location: 331947-332091 bp Feature: gene Location: 332235-333575 bp Feature: domain Description: VirD4 Location: 332394-333471 bp Feature: domain Description: VirD4 Location: 332394-333471 bp Feature: gene Location: 333589-333771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirD4 (COG3505)