myRT

myRT report for GCA_003433855.1_ASM343385v1

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Seq: QVEP01000013.1 Coprococcus catus strain AF45-17 AF45-17.Scaf13, whole genome shotgun sequence (71258 bp)
Overview 1 RT 1: 22122-25765 bp Neighborhood of RT #1 [22122, 25765] RVT-DGRs Feature: gene Location: 22122-23372 bp Feature: gene Location: 23571-23720 bp Feature: gene Location: 23884-25155 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24184-24844 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 241 84-24844 bp Feature: gene Location: 25435-25581 bp Feature: gene Location: 25574-25765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QVEP01000027.1 Coprococcus catus strain AF45-17 AF45-17.Scaf27, whole genome shotgun sequence (43186 bp)
Overview 1 RT 1: 33253-39925 bp Neighborhood of RT #1 [33253, 39925] YodL LPD16 DUF4316 LPD25 RVT_N RVT-GII YkfC Feature: gene Location: 33253-36009 bp Feature: domain Description: YodL Location: 34033-34327 bp Feature: domain Description: YodL Location: 34033-3432 7 bp Feature: domain Description: LPD16 Location: 34357-34579 bp Feature: domain Description: LPD16 Location: 34357-34579 bp Feature: domain Description: DUF4316 Location: 34627-34711 bp Feature: domain Description: DUF4316 Location: 3462 7-34711 bp Feature: domain Description: LPD25 Location: 35320-35617 bp Feature: domain Description: LPD2 5 Location: 3532 0-35617 bp Feature: gene Location: 36086-37081 bp Feature: gene Location: 37082-38752 bp Feature: RT Description: RVT_N Location: 37127-37370 bp Feature: RT Description: RVT_N Location: 3712 7-37370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37415-38063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37415-38063 bp Feature: domain Description: YkfC Location: 38171-38366 bp Feature: domain Description: YkfC Location: 38171-38366 bp Feature: gene Location: 39142-39489 bp Feature: gene Location: 39731-39925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840), RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: QVEP01000068.1 Coprococcus catus strain AF45-17 AF45-17.Scaf68, whole genome shotgun sequence (12822 bp)
Overview 1 RT 1: 8388-12436 bp Neighborhood of RT #1 [8388, 12436] RVT-Retrons Glf Feature: gene Location: 8388-8963 bp Feature: gene Location: 9020-9334 bp Feature: gene Location: 9331-10254 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9430-10006 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 943 0-10006 bp Feature: gene Location: 10276-11394 bp Feature: domain Description: Glf Location: 10282-11383 bp Feature: domain Description: Glf Location: 10282-113 83 bp Feature: gene Location: 11432-12436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glf (COG0562), RVT-Retrons

Seq: QVEP01000093.1 Coprococcus catus strain AF45-17 AF45-17.Scaf93, whole genome shotgun sequence (3616 bp)
Overview 1 RT 1: 399-1978 bp Neighborhood of RT #1 [399, 1978] RVT-CRISPR-like Feature: gene Location: 399-1082 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 660-921 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 660-921 bp Feature: gene Location: 1330-1530 bp Feature: gene Location: 1583-1978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR