myRT

myRT report for GCA_003433865.1_ASM343386v1

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Seq: QVEQ01000001.1 Faecalibacterium prausnitzii strain AF36-11AT AF36-11AT.Scaf1, whole genome shotgun sequence (542661 bp)
Overview 1 RT 1: 461428-464201 bp Neighborhood of RT #1 [461428, 464224] Phage_holin_4_1 Peptidase_M15_3 RVT-DGRs Avd_like Feature: gene Location: 461428-461835 bp Feature: domain Description: Phage_holin_4_1 Location: 461455-461806 bp Feature: domain Description: Phage_holin_4_1 Location: 461 455-461 806 bp Feature: gene Location: 461856-462269 bp Feature: domain Description: Peptidase_M15_3 Location: 461910-462237 bp Feature: domain Description: Peptidase_M1 5_3 Location: 461 91 0-462237 bp Feature: gene Location: 462187-463371 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 462406-463054 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 462406-463054 bp Feature: gene Location: 463489-463704 bp Feature: gene Location: 463745-464224 bp Feature: domain Description: Avd_like Location: 463817-464201 bp Feature: domain Description: Avd_like Location: 46381 7-464201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), Peptidase_M15_3 (pfam08291), RVT-DGRs, Avd_like (cd16376)

Seq: QVEQ01000025.1 Faecalibacterium prausnitzii strain AF36-11AT AF36-11AT.Scaf25, whole genome shotgun sequence (14795 bp)
Overview 1 RT 1: 1069-5990 bp Neighborhood of RT #1 [1069, 6031] ParB_N_like Spo0J RVT_N RVT-GII GIIM MobC Feature: gene Location: 1069-1995 bp Feature: domain Description: ParB_N_like Location: 1183-1432 bp Feature: domain Description: ParB_N_like Location: 1183-1432 bp Feature: domain Description: Spo0J Location: 1555-1798 bp Feature: domain Description: Spo0J Location: 1555-1798 bp Feature: gene Location: 2060-2428 bp Feature: gene Location: 2922-4712 bp Feature: RT Description: RVT_N Location: 3063-3306 bp Feature: RT Description: RVT_N Location: 3063-3306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3351-3999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3351-3999 bp Feature: domain Description: GIIM Note: maturase Location: 4056-4287 bp Feature: domain Description: GIIM Note: maturase Location: 4056-42 87 bp Feature: gene Location: 4834-5700 bp Feature: gene Location: 5702-6031 bp Feature: domain Description: MobC Location: 5894-5990 bp Feature: domain Description: MobC Location: 5894-5990 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like (cd16411), Spo0J (COG1475), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MobC (pfam05713)

Seq: QVEQ01000003.1 Faecalibacterium prausnitzii strain AF36-11AT AF36-11AT.Scaf3, whole genome shotgun sequence (380567 bp)
Overview 1 RT 1: 9926-14558 bp 2 RT 2: 335462-338271 bp 3 RT 3: 353165-357726 bp Neighborhood of RT #1 [9926, 15193] ABC_trans_CmpB RVT-DGRs DUF3751 DUF2313 Neighborhood of RT #2 [335462, 338279] HTH_XRE RVT-Retrons DUF5333 DUF5333 Neighborhood of RT #3 [353165, 357726] VirD4 RVT-GII T4SS-DNA_transf Feature: gene Location: 9926-10591 bp Feature: domain Description: ABC_trans_CmpB Location: 10268-10511 bp Feature: domain Description: ABC_trans_CmpB Location: 10268-10511 bp Feature: gene Location: 10347-11012 bp Feature: gene Location: 10945-12045 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11161-11752 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11161-11752 bp Feature: gene Location: 12428-14278 bp Feature: domain Description: DUF3751 Location: 12440-12863 bp Feature: domain Description: DUF3 751 Location: 12440-12863 bp Feature: gene Location: 14279-15193 bp Feature: domain Description: DUF2313 Location: 14285-14558 bp Feature: domain Description: DUF23 13 Location: 14285-14558 bp Feature: gene Location: 335462-335653 bp Feature: gene Location: 335756-336061 bp Feature: domain Description: HTH_XRE Location: 335765-335930 bp Feature: domain Description: HTH_XRE Location: 3 3 5765-3 3 593 0 bp Feature: gene Location: 336051-337085 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 336210-336744 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 3 6210-3 3 6744 bp Feature: gene Location: 337350-337730 bp Feature: gene Location: 337797-338279 bp Feature: domain Description: DUF5333 Location: 337836-338004 bp Feature: domain Description: DUF53 3 3 Location: 3 3 783 6-3 3 8004 bp Feature: domain Description: DUF5333 Location: 338076-338271 bp Feature: domain Description: DUF53 3 3 Location: 3 3 8076-3 3 8271 bp Feature: gene Location: 353165-353833 bp Feature: domain Description: VirD4 Location: 353396-353774 bp Feature: domain Description: VirD4 Location: 3 53 3 96-3 53 774 bp Feature: gene Location: 353983-354303 bp Feature: gene Location: 354455-356332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354773-355517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 54773 -3 55517 bp Feature: gene Location: 356441-357385 bp Feature: domain Description: T4SS-DNA_transf Location: 356495-357338 bp Feature: domain Description: T4SS-DNA_transf Location: 3 56495-3 573 3 8 bp Feature: gene Location: 357478-357726 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571), DUF2313 (pfam10076), HTH_XRE (smart00530), RVT-Retrons, DUF5333 (pfam17267), VirD4 (COG3505), RVT-GII, T4SS-DNA_transf (pfam02534)

Seq: QVEQ01000039.1 Faecalibacterium prausnitzii strain AF36-11AT AF36-11AT.Scaf39, whole genome shotgun sequence (4545 bp)
Overview 1 RT 1: 186-4543 bp Neighborhood of RT #1 [186, 4543] Spr RVT-GII Intron_maturas2 HNHc Feature: gene Location: 186-1772 bp Feature: domain Description: Spr Location: 1476-1725 bp Feature: domain Description: Spr Location: 14 76-1725 bp Feature: gene Location: 2367-4163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2634-3447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2634 -34 4 7 bp Feature: domain Description: Intron_maturas2 Location: 3513-3792 bp Feature: domain Description: Intron_maturas2 Location: 3513-3792 bp Feature: domain Description: HNHc Note: nucleases Location: 3981-4134 bp Feature: domain Description: HNHc Note: nucleases Location: 3981-4 134 bp Feature: gene Location: 4391-4543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QVEQ01000008.1 Faecalibacterium prausnitzii strain AF36-11AT AF36-11AT.Scaf8, whole genome shotgun sequence (110165 bp)
Overview 1 RT 1: 105199-110026 bp Neighborhood of RT #1 [105199, 110163] PrgI TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Feature: gene Location: 105199-105561 bp Feature: domain Description: PrgI Location: 105220-105490 bp Feature: domain Description: PrgI Location: 105 220-105 490 bp Feature: gene Location: 105536-107002 bp Feature: domain Description: TraC-F-type Location: 105983-106928 bp Feature: domain Description: TraC-F-type Location: 105 983-106928 bp Feature: gene Location: 107529-109211 bp Feature: RT Description: RVT_N Location: 107607-107850 bp Feature: RT Description: RVT_N Location: 107607-10785 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107895-108558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107895 -1085 5 8 bp Feature: domain Description: GIIM Note: maturase Location: 108609-108846 bp Feature: domain Description: GIIM Note: maturase Location: 108609-108846 bp Feature: gene Location: 109216-110163 bp Feature: domain Description: TraC-F-type Location: 109300-110026 bp Feature: domain Description: TraC-F-type Location: 109300-110026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)