myRT

myRT report for GCA_003433985.1_ASM343398v1

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Seq: QVEV01000018.1 [Clostridium] innocuum strain OF01-2LB OF01-2LB.Scaf18, whole genome shotgun sequence (90776 bp)
Overview 1 RT 1: 82118-90097 bp Neighborhood of RT #1 [82118, 90774] Phage_int_SAM_3 INT_ICEBs1_C_like Avd_like RVT-DGRs Big_3_2 Big_3_2 Feature: gene Location: 82118-83158 bp Feature: domain Description: Phage_int_SAM_3 Location: 82196-82364 bp Feature: domain Description: Phage_int_SAM_3 Location: 821 96-82364 bp Feature: domain Description: INT_ICEBs1_C_like Location: 82595-83087 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 82595-83087 bp Feature: gene Location: 83260-83829 bp Feature: domain Description: Avd_like Location: 83296-83632 bp Feature: domain Description: Avd_like Location: 83296-83632 bp Feature: gene Location: 83900-84886 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84098-84704 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 84098-84704 bp Feature: gene Location: 84937-90774 bp Feature: domain Description: Big_3_2 Location: 89599-89866 bp Feature: domain Description: Big_3_2 Location: 89599-89866 bp Feature: domain Description: Big_3_2 Location: 89998-90097 bp Feature: domain Description: Big_3_2 Location: 89998-90097 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), Avd_like (cd16376), RVT-DGRs, Big_3_2 (pfam12245)

Seq: QVEV01000002.1 [Clostridium] innocuum strain OF01-2LB OF01-2LB.Scaf2, whole genome shotgun sequence (303570 bp)
Overview 1 RT 1: 146355-162906 bp Neighborhood of RT #1 [146355, 162914] SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA SpaA DUF11 DUF11 SdrD_B SpaA SdrD_B SdrD_B SdrD_B RVT-GII GIIM DnrI SUA5 Feature: gene Location: 146355-158588 bp Feature: domain Description: SpaA Location: 147753-147936 bp Feature: domain Description: SpaA Location: 147753-147936 bp Feature: domain Description: SpaA Location: 148098-148299 bp Feature: domain Description: SpaA Location: 148098-1482 99 bp Feature: domain Description: SpaA Location: 148422-148656 bp Feature: domain Description: SpaA Location: 14842 2 -148656 bp Feature: domain Description: SpaA Location: 148749-148965 bp Feature: domain Description: SpaA Location: 148749-148965 bp Feature: domain Description: SpaA Location: 149082-149250 bp Feature: domain Description: SpaA Location: 149082 -1492 50 bp Feature: domain Description: SpaA Location: 149391-149604 bp Feature: domain Description: SpaA Location: 149391-149604 bp Feature: domain Description: SpaA Location: 149721-149934 bp Feature: domain Description: SpaA Location: 14972 1-149934 bp Feature: domain Description: SpaA Location: 150399-150528 bp Feature: domain Description: SpaA Location: 150399-15052 8 bp Feature: domain Description: SpaA Location: 150705-150969 bp Feature: domain Description: SpaA Location: 150705-150969 bp Feature: domain Description: SpaA Location: 151188-151356 bp Feature: domain Description: SpaA Location: 151188-151356 bp Feature: domain Description: SpaA Location: 151470-151704 bp Feature: domain Description: SpaA Location: 151470-151704 bp Feature: domain Description: SpaA Location: 151800-152013 bp Feature: domain Description: SpaA Location: 151800-152 013 bp Feature: domain Description: SpaA Location: 152154-152316 bp Feature: domain Description: SpaA Location: 152 154-152 316 bp Feature: domain Description: SpaA Location: 152472-152649 bp Feature: domain Description: SpaA Location: 152 472 -152 649 bp Feature: domain Description: SpaA Location: 152790-152967 bp Feature: domain Description: SpaA Location: 152 790-152 967 bp Feature: domain Description: SpaA Location: 153090-153267 bp Feature: domain Description: SpaA Location: 153090-1532 67 bp Feature: domain Description: SpaA Location: 153390-153591 bp Feature: domain Description: SpaA Location: 153390-153591 bp Feature: domain Description: SpaA Location: 153705-153867 bp Feature: domain Description: SpaA Location: 153705-153867 bp Feature: domain Description: SpaA Location: 153990-154182 bp Feature: domain Description: SpaA Location: 153990-154182 bp Feature: domain Description: DUF11 Location: 155031-155175 bp Feature: domain Description: DUF11 Location: 155031-155175 bp Feature: domain Description: DUF11 Location: 155703-155853 bp Feature: domain Description: DUF11 Location: 155703-155853 bp Feature: domain Description: SdrD_B Location: 156381-156783 bp Feature: domain Description: SdrD_B Location: 156381-156783 bp Feature: domain Description: SpaA Location: 156951-157080 bp Feature: domain Description: SpaA Location: 156951-157080 bp Feature: domain Description: SdrD_B Location: 157290-157644 bp Feature: domain Description: SdrD_B Location: 1572 90-157644 bp Feature: domain Description: SdrD_B Location: 157662-158037 bp Feature: domain Description: SdrD_B Location: 157662 -158037 bp Feature: domain Description: SdrD_B Location: 158055-158415 bp Feature: domain Description: SdrD_B Location: 158055-158415 bp Feature: gene Location: 158663-158965 bp Feature: gene Location: 158962-160245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159166-159781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159166-159781 bp Feature: domain Description: GIIM Note: maturase Location: 159841-160072 bp Feature: domain Description: GIIM Note: maturase Location: 159841-160072 bp Feature: gene Location: 160799-161986 bp Feature: domain Description: DnrI Location: 160820-161579 bp Feature: domain Description: DnrI Location: 16082 0-161579 bp Feature: gene Location: 162171-162914 bp Feature: domain Description: SUA5 Location: 162306-162906 bp Feature: domain Description: SUA5 Location: 162 306-162 906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpaA (pfam17802), DUF11 (pfam01345), SdrD_B (pfam17210), RVT-GII, GIIM (pfam08388), DnrI (COG3629), SUA5 (pfam03481)

Seq: QVEV01000027.1 [Clostridium] innocuum strain OF01-2LB OF01-2LB.Scaf27, whole genome shotgun sequence (61203 bp)
Overview 1 RT 1: 58144-61039 bp Neighborhood of RT #1 [58144, 61039] AraC_binding AraC RVT-GII GIIM group_II_RT_mat Feature: gene Location: 58144-59073 bp Feature: domain Description: AraC_binding Location: 58312-58663 bp Feature: domain Description: AraC_binding Location: 583 12-58663 bp Feature: domain Description: AraC Location: 58732-59041 bp Feature: domain Description: AraC Location: 5873 2-59041 bp Feature: gene Location: 59103-59267 bp Feature: gene Location: 59497-60444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59503-59965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59503 -59965 bp Feature: domain Description: GIIM Note: maturase Location: 60019-60229 bp Feature: domain Description: GIIM Note: maturase Location: 60019-60229 bp Feature: gene Location: 60506-60796 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 60536-60728 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 6053 6-60728 bp Feature: gene Location: 60857-61039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_binding (pfam02311), AraC (COG2207), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: QVEV01000032.1 [Clostridium] innocuum strain OF01-2LB OF01-2LB.Scaf32, whole genome shotgun sequence (54856 bp)
Overview 1 RT 1: 32914-37741 bp Neighborhood of RT #1 [32914, 37752] TPK RVT-GII thrS UMPK_like rpmB Feature: gene Location: 32914-33522 bp Feature: domain Description: TPK Location: 32971-33505 bp Feature: domain Description: TPK Location: 32971-33505 bp Feature: gene Location: 33696-33857 bp Feature: gene Location: 34236-35432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34473-35034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 4 73-35034 bp Feature: gene Location: 35647-37272 bp Feature: domain Description: thrS Location: 35653-36259 bp Feature: domain Description: thrS Location: 35653-36259 bp Feature: domain Description: UMPK_like Location: 36481-37075 bp Feature: domain Description: UMPK_like Location: 364 81-37075 bp Feature: gene Location: 37561-37752 bp Feature: domain Description: rpmB Location: 37564-37741 bp Feature: domain Description: rpmB Location: 37564 -3774 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPK (cl21552), RVT-GII, thrS (TIGR00418), UMPK_like (cd02028), rpmB (PRK00359)

Seq: QVEV01000046.1 [Clostridium] innocuum strain OF01-2LB OF01-2LB.Scaf46, whole genome shotgun sequence (26950 bp)
Overview 1 RT 1: 22028-26653 bp Neighborhood of RT #1 [22028, 26715] NGN_Bact_2 KOW_NusG RVT-GII GIIM group_II_RT_mat FlaA1 Feature: gene Location: 22028-22360 bp Feature: domain Description: NGN_Bact_2 Location: 22031-22154 bp Feature: domain Description: NGN_Bact_2 Location: 22031-2215 4 bp Feature: domain Description: KOW_NusG Location: 22196-22355 bp Feature: domain Description: KOW_NusG Location: 22196-2235 5 bp Feature: gene Location: 22434-22721 bp Feature: gene Location: 22931-23965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22934-23531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22934-235 31 bp Feature: domain Description: GIIM Note: maturase Location: 23585-23816 bp Feature: domain Description: GIIM Note: maturase Location: 235 85 -23816 bp Feature: gene Location: 23969-24175 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23993-24173 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 23993-24173 bp Feature: gene Location: 24811-26715 bp Feature: domain Description: FlaA1 Location: 24877-26653 bp Feature: domain Description: FlaA1 Location: 24877-2665 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_Bact_2 (cd09889), KOW_NusG (cd06091), RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416), FlaA1 (COG1086)