myRT

myRT report for GCA_003434445.1_ASM343444v1

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Seq: QTLH01000110.1 Parabacteroides sp. AM18-12LB AM18-12LB.Scaf110, whole genome shotgun sequence (12635 bp)
Overview 1 RT 1: 1778-5907 bp Neighborhood of RT #1 [1778, 6647] TraG-D_C RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 1778-2092 bp Feature: gene Location: 2200-3429 bp Feature: domain Description: TraG-D_C Location: 2779-3115 bp Feature: domain Description: TraG-D_C Location: 2779-31 1 5 bp Feature: gene Location: 3434-5086 bp Feature: domain Description: RVT_N Location: 3488-3731 bp Feature: domain Description: RVT_N Location: 3488-3731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3776-4424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3776-4424 bp Feature: domain Description: GIIM Note: maturase Location: 4478-4709 bp Feature: domain Description: GIIM Note: maturase Location: 4478-4709 bp Feature: gene Location: 5403-5537 bp Feature: gene Location: 5724-6647 bp Feature: domain Description: YWFCY Location: 5730-5907 bp Feature: domain Description: YWFCY Location: 5730-5907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)

Seq: QTLH01000170.1 Parabacteroides sp. AM18-12LB AM18-12LB.Scaf170, whole genome shotgun sequence (5511 bp)
Overview 1 RT 1: 3-3809 bp Neighborhood of RT #1 [3, 3809] RVT-DGRs Feature: gene Location: 3-134 bp Feature: gene Location: 147-560 bp Feature: gene Location: 618-2012 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 705-1452 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 705-1452 bp Feature: gene Location: 2836-3402 bp Feature: gene Location: 3399-3809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTLH01000030.1 Parabacteroides sp. AM18-12LB AM18-12LB.Scaf30, whole genome shotgun sequence (52003 bp)
Overview 1 RT 1: 161-2860 bp Neighborhood of RT #1 [161, 2883] RVT-AbiP2 COG1373 AAA_14 Feature: gene Location: 161-499 bp Feature: gene Location: 601-1569 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1204-1555 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1204-1555 bp Feature: gene Location: 1628-2428 bp Feature: domain Description: COG1373 Location: 1658-2408 bp Feature: domain Description: COG13 73 Location: 1658-2408 bp Feature: gene Location: 2455-2883 bp Feature: domain Description: AAA_14 Location: 2521-2860 bp Feature: domain Description: AAA_14 Location: 2521-2860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, COG1373 (Predicted ATPase, AAA+ superfamily ), AAA_14 (pfam13173)

Seq: QTLH01000031.1 Parabacteroides sp. AM18-12LB AM18-12LB.Scaf31, whole genome shotgun sequence (51106 bp)
Overview 1 RT 1: 39947-49709 bp Neighborhood of RT #1 [39947, 49777] COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C PRK13351 Feature: gene Location: 39947-42040 bp Feature: domain Description: COG4646 Location: 41141-41972 bp Feature: domain Description: COG4 64 6 Location: 4 114 1-4 1972 bp Feature: gene Location: 42265-42534 bp Feature: gene Location: 42640-44442 bp Feature: domain Description: matK Location: 42709-42796 bp Feature: domain Description: matK Location: 4 2709-4 2796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42904-43726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 2904 -4 3726 bp Feature: domain Description: Intron_maturas2 Location: 43876-44110 bp Feature: domain Description: Intron_maturas2 Location: 4 3876-4 4 110 bp Feature: gene Location: 44429-47194 bp Feature: domain Description: COG4646 Location: 44543-45683 bp Feature: domain Description: COG4 64 6 Location: 4 4 54 3-4 5683 bp Feature: domain Description: Helicase_C Location: 45896-46094 bp Feature: domain Description: Helicase_C Location: 4 5896-4 6094 bp Feature: gene Location: 47852-49777 bp Feature: domain Description: PRK13351 Location: 47855-49709 bp Feature: domain Description: PRK13351 Location: 4 7855-4 9709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), PRK13351 (elongation factor G-like protein)

Seq: QTLH01000059.1 Parabacteroides sp. AM18-12LB AM18-12LB.Scaf59, whole genome shotgun sequence (36323 bp)
Overview 1 RT 1: 9767-15923 bp 2 RT 2: 21732-27589 bp Neighborhood of RT #1 [9767, 15934] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Bac_Flav_CT_J Neighborhood of RT #2 [21732, 27589] ArdA ORF6N ORF6N RVT-GII Intron_maturas2 RVT-GII Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 9767-11680 bp Feature: domain Description: Bac_Flav_CT_G Location: 9770-11672 bp Feature: domain Description: Bac_Flav_CT_G Location: 9770-11672 bp Feature: gene Location: 11694-11846 bp Feature: gene Location: 12228-14051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12492-13314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12492-13314 bp Feature: domain Description: Intron_maturas2 Location: 13488-13689 bp Feature: domain Description: Intron_maturas2 Location: 13488-13689 bp Feature: domain Description: HNHc Note: nucleases Location: 13842-14013 bp Feature: domain Description: HNHc Note: nucleases Location: 13842-14013 bp Feature: gene Location: 14293-14919 bp Feature: domain Description: DUF4141 Location: 14305-14458 bp Feature: domain Description: DUF4141 Location: 14305 -1445 8 bp Feature: gene Location: 14933-15934 bp Feature: domain Description: Bac_Flav_CT_J Location: 14960-15923 bp Feature: domain Description: Bac_Flav_CT_J Location: 14960-15 923 bp Feature: gene Location: 21732-22265 bp Feature: domain Description: ArdA Location: 21765-22251 bp Feature: domain Description: ArdA Location: 21765 -2225 1 bp Feature: gene Location: 22900-23385 bp Feature: domain Description: ORF6N Location: 22927-23146 bp Feature: domain Description: ORF6N Location: 22927-23146 bp Feature: domain Description: ORF6N Location: 23248-23347 bp Feature: domain Description: ORF6N Location: 23248-23347 bp Feature: gene Location: 23719-24837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23908-24115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23908-24115 bp Feature: domain Description: Intron_maturas2 Location: 24241-24496 bp Feature: domain Description: Intron_maturas2 Location: 24241-24496 bp Feature: gene Location: 24882-25526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25146-25506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 146-25 5 06 bp Feature: gene Location: 26077-27237 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26104-26356 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26104-2635 6 bp Feature: domain Description: Phage_int_SAM_5 Location: 26398-26713 bp Feature: domain Description: Phage_int_SAM_5 Location: 26398-26713 bp Feature: domain Description: INTN1_C_like Location: 26752-27220 bp Feature: domain Description: INTN1_C_like Location: 2675 2-27220 bp Feature: gene Location: 27455-27589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782), ArdA (pfam07275), ORF6N (pfam10543), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)
INTN1_C_like (cd01185)