myRT

myRT report for GCA_003434605.1_ASM343460v1

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Seq: QTLG01000017.1 Bacteroides sp. AM18-9 AM18-9.Scaf17, whole genome shotgun sequence (122331 bp)
Overview 1 RT 1: 9358-12955 bp Neighborhood of RT #1 [9358, 12955] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 9358-9729 bp Feature: domain Description: COG2865 Location: 9442-9706 bp Feature: domain Description: COG2865 Location: 9442-9706 bp Feature: gene Location: 10030-10248 bp Feature: gene Location: 10367-12028 bp Feature: domain Description: RVT_N Location: 10421-10664 bp Feature: domain Description: RVT_N Location: 1 0421 -1 0664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10709-11357 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0709-1 1 357 bp Feature: domain Description: GIIM Note: maturase Location: 11408-11642 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 408-1 1 642 bp Feature: gene Location: 12354-12659 bp Feature: gene Location: 12761-12955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTLG01000018.1 Bacteroides sp. AM18-9 AM18-9.Scaf18, whole genome shotgun sequence (111978 bp)
Overview 1 RT 1: 107926-111375 bp Neighborhood of RT #1 [107926, 111401] Bac_Flav_CT_J SesA RVT-GII Intron_maturas2 HNHc Feature: gene Location: 107926-108930 bp Feature: domain Description: Bac_Flav_CT_J Location: 107932-108901 bp Feature: domain Description: Bac_Flav_CT_J Location: 107932 -108901 bp Feature: gene Location: 108934-109425 bp Feature: domain Description: SesA Location: 108970-109297 bp Feature: domain Description: SesA Location: 108970-1092 97 bp Feature: gene Location: 109593-111401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109857-110679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109857-110679 bp Feature: domain Description: Intron_maturas2 Location: 110775-111114 bp Feature: domain Description: Intron_maturas2 Location: 110775-111114 bp Feature: domain Description: HNHc Note: nucleases Location: 111222-111375 bp Feature: domain Description: HNHc Note: nucleases Location: 1112 2 2 -111375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), SesA (pfam17107), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTLG01000036.1 Bacteroides sp. AM18-9 AM18-9.Scaf36, whole genome shotgun sequence (26837 bp)
Overview 1 RT 1: 7028-11344 bp Neighborhood of RT #1 [7028, 11883] Imm17 TraG-D_C RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 7028-7309 bp Feature: domain Description: Imm17 Location: 7118-7295 bp Feature: domain Description: Imm17 Location: 7118-7295 bp Feature: gene Location: 7463-8869 bp Feature: domain Description: TraG-D_C Location: 8243-8576 bp Feature: domain Description: TraG-D_C Location: 8243 -8576 bp Feature: gene Location: 8872-10554 bp Feature: domain Description: RVT_N Location: 8944-9184 bp Feature: domain Description: RVT_N Location: 8944-9184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9232-9886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 923 2-9886 bp Feature: domain Description: GIIM Note: maturase Location: 9940-10171 bp Feature: domain Description: GIIM Note: maturase Location: 9940-10171 bp Feature: gene Location: 10676-10981 bp Feature: gene Location: 11161-11883 bp Feature: domain Description: YWFCY Location: 11167-11344 bp Feature: domain Description: YWFCY Location: 11167-113 44 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Imm17 (pfam15562), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)

Seq: QTLG01000043.1 Bacteroides sp. AM18-9 AM18-9.Scaf43, whole genome shotgun sequence (14289 bp)
Overview 1 RT 1: 9662-14148 bp Neighborhood of RT #1 [9662, 14171] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Feature: gene Location: 9662-11755 bp Feature: domain Description: Bac_Flav_CT_G Location: 9665-11744 bp Feature: domain Description: Bac_Flav_CT_G Location: 9665-1174 4 bp Feature: gene Location: 11850-12047 bp Feature: gene Location: 12345-14171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12630-13452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12630-134 52 bp Feature: domain Description: Intron_maturas2 Location: 13524-13848 bp Feature: domain Description: Intron_maturas2 Location: 13524 -1384 8 bp Feature: domain Description: HNHc Note: nucleases Location: 14001-14148 bp Feature: domain Description: HNHc Note: nucleases Location: 14 001-14 14 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTLG01000075.1 Bacteroides sp. AM18-9 AM18-9.Scaf75, whole genome shotgun sequence (2391 bp)
Overview 1 RT 1: 110-2156 bp Neighborhood of RT #1 [110, 2156] RVT_N RVT-GII GIIM Feature: gene Location: 110-1765 bp Feature: domain Description: RVT_N Location: 164-407 bp Feature: domain Description: RVT_N Location: 164-407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 452-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45 2-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1148-1382 bp Feature: domain Description: GIIM Note: maturase Location: 1148-1382 bp Feature: gene Location: 1839-2156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTLG01000009.1 Bacteroides sp. AM18-9 AM18-9.Scaf9, whole genome shotgun sequence (227347 bp)
Overview 1 RT 1: 5379-12769 bp Neighborhood of RT #1 [5379, 12780] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 5379-6413 bp Feature: domain Description: dnaG Location: 5466-6369 bp Feature: domain Description: dnaG Location: 546 6 -6 36 9 bp Feature: gene Location: 6420-7160 bp Feature: gene Location: 7162-10599 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 7672-8137 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 76 72-8137 bp Feature: gene Location: 11036-12241 bp Feature: domain Description: Arm-DNA-bind_5 Location: 11069-11285 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1106 9-11285 bp Feature: domain Description: Phage_int_SAM_5 Location: 11423-11651 bp Feature: domain Description: Phage_int_SAM_5 Location: 11423-116 51 bp Feature: domain Description: INTN1_C_like Location: 11723-12227 bp Feature: domain Description: INTN1_C_like Location: 11723-12227 bp Feature: gene Location: 12379-12780 bp Feature: domain Description: HTH_17 Location: 12622-12769 bp Feature: domain Description: HTH_17 Location: 126 22-1276 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)