myRT

myRT report for GCA_003434615.1_ASM343461v1

Download annotations/find similar RTs

Seq: QTLE01000010.1 Bacteroides sp. AM23-18 AM23-18.Scaf10, whole genome shotgun sequence (176456 bp)
Overview 1 RT 1: 155230-158579 bp Neighborhood of RT #1 [155230, 158590] DUF3989 Bac_Flav_CT_K RVT_N RVT-GII GIIM Bac_Flav_CT_K Feature: gene Location: 155230-155535 bp Feature: domain Description: DUF3989 Location: 155236-155473 bp Feature: domain Description: DUF3989 Location: 1 55236-1 55473 bp Feature: gene Location: 155548-155781 bp Feature: domain Description: Bac_Flav_CT_K Location: 155554-155776 bp Feature: domain Description: Bac_Flav_CT_K Location: 1 55554-1 55776 bp Feature: gene Location: 155900-157561 bp Feature: domain Description: RVT_N Location: 155954-156197 bp Feature: domain Description: RVT_N Location: 1 55954-1 561 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156242-156890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 56242-1 56890 bp Feature: domain Description: GIIM Note: maturase Location: 156941-157175 bp Feature: domain Description: GIIM Note: maturase Location: 1 56941 -1 571 75 bp Feature: gene Location: 157675-157899 bp Feature: gene Location: 158198-158590 bp Feature: domain Description: Bac_Flav_CT_K Location: 158216-158579 bp Feature: domain Description: Bac_Flav_CT_K Location: 1 5821 6-1 58579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3989 (pfam13150), Bac_Flav_CT_K (TIGR03781), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTLE01000017.1 Bacteroides sp. AM23-18 AM23-18.Scaf17, whole genome shotgun sequence (107131 bp)
Overview 1 RT 1: 11894-16364 bp Neighborhood of RT #1 [11894, 16381] HTH_17 COG3943 RVT-GII Intron_maturas2 HNHc Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 11894-12199 bp Feature: domain Description: HTH_17 Location: 12032-12161 bp Feature: domain Description: HTH_17 Location: 12 032 -12 161 bp Feature: gene Location: 12277-12639 bp Feature: domain Description: COG3943 Location: 12316-12565 bp Feature: domain Description: COG3943 Location: 12 316-12 565 bp Feature: gene Location: 12853-14661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13117-13939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13117-13939 bp Feature: domain Description: Intron_maturas2 Location: 14065-14320 bp Feature: domain Description: Intron_maturas2 Location: 14065-1432 0 bp Feature: domain Description: HNHc Note: nucleases Location: 14494-14635 bp Feature: domain Description: HNHc Note: nucleases Location: 14494-14635 bp Feature: gene Location: 14961-15110 bp Feature: gene Location: 15212-16381 bp Feature: domain Description: Arm-DNA-bind_5 Location: 15242-15497 bp Feature: domain Description: Arm-DNA-bind_5 Location: 152 42 -15497 bp Feature: domain Description: Phage_int_SAM_5 Location: 15536-15857 bp Feature: domain Description: Phage_int_SAM_5 Location: 15536-15857 bp Feature: domain Description: INTN1_C_like Location: 15896-16364 bp Feature: domain Description: INTN1_C_like Location: 15896-16364 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QTLE01000002.1 Bacteroides sp. AM23-18 AM23-18.Scaf2, whole genome shotgun sequence (738596 bp)
Overview 1 RT 1: 253846-258801 bp Neighborhood of RT #1 [253846, 259259] DUF262 RVT-UG28b VirE_N Feature: gene Location: 253846-255543 bp Feature: domain Description: DUF262 Location: 253903-254536 bp Feature: domain Description: DUF262 Location: 253 903 -25453 6 bp Feature: gene Location: 255546-256346 bp Feature: gene Location: 256350-257723 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 256374-257127 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 2563 74-257127 bp Feature: gene Location: 257755-258126 bp Feature: gene Location: 258240-259259 bp Feature: domain Description: VirE_N Location: 258432-258801 bp Feature: domain Description: VirE_N Location: 25843 2-258801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), RVT-UG28b, VirE_N (pfam08800)

Seq: QTLE01000021.1 Bacteroides sp. AM23-18 AM23-18.Scaf21, whole genome shotgun sequence (82511 bp)
Overview 1 RT 1: 42155-46561 bp Neighborhood of RT #1 [42155, 46587] RVT_N RVT-GII GIIM COG2865 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 42155-42349 bp Feature: gene Location: 42451-42756 bp Feature: gene Location: 43082-44743 bp Feature: domain Description: RVT_N Location: 43136-43379 bp Feature: domain Description: RVT_N Location: 4 3136-4 3379 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43424-44072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 34 24 -4 4 072 bp Feature: domain Description: GIIM Note: maturase Location: 44123-44357 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 123-4 4 357 bp Feature: gene Location: 45644-45868 bp Feature: domain Description: COG2865 Location: 45659-45848 bp Feature: domain Description: COG2865 Location: 4 5659-4 584 8 bp Feature: gene Location: 46078-46587 bp Feature: domain Description: DDE_Tnp_IS66 Location: 46081-46420 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4 6081-4 64 20 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 46444-46561 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4 64 4 4 -4 6561 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG2865 (Predicted transcriptional regulator, contains HTH domain ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: QTLE01000027.1 Bacteroides sp. AM23-18 AM23-18.Scaf27, whole genome shotgun sequence (58144 bp)
Overview 1 RT 1: 54220-58142 bp Neighborhood of RT #1 [54220, 58142] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc Feature: gene Location: 54220-55221 bp Feature: domain Description: Bac_Flav_CT_J Location: 54247-55210 bp Feature: domain Description: Bac_Flav_CT_J Location: 5 4247-5 5 210 bp Feature: gene Location: 55236-55772 bp Feature: gene Location: 55765-57600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56059-56881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 605 9-5 6881 bp Feature: domain Description: Intron_maturas2 Location: 57040-57409 bp Feature: domain Description: Intron_maturas2 Location: 5 7040-5 7409 bp Feature: domain Description: HNHc Note: nucleases Location: 57433-57574 bp Feature: domain Description: HNHc Note: nucleases Location: 5 7433-5 75 74 bp Feature: gene Location: 58002-58142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTLE01000047.1 Bacteroides sp. AM23-18 AM23-18.Scaf47, whole genome shotgun sequence (2506 bp)
Overview 1 RT 1: 113-1904 bp Neighborhood of RT #1 [113, 1930] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 113-1930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 380-1202 bp Feature: domain Description: Intron_maturas2 Location: 1310-1580 bp Feature: domain Description: Intron_maturas2 Location: 1310-1580 bp Feature: domain Description: HNHc Note: nucleases Location: 1751-1904 bp Feature: domain Description: HNHc Note: nucleases Location: 1751-1904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTLE01000009.1 Bacteroides sp. AM23-18 AM23-18.Scaf9, whole genome shotgun sequence (177843 bp)
Overview 1 RT 1: 173915-176915 bp Neighborhood of RT #1 [173915, 176915] RVT-GII GIIM Feature: gene Location: 173915-174322 bp Feature: gene Location: 174368-174610 bp Feature: gene Location: 174893-176188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175088-175703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17 5088-17 57 03 bp Feature: domain Description: GIIM Note: maturase Location: 175775-175988 bp Feature: domain Description: GIIM Note: maturase Location: 17 57 7 5-17 5988 bp Feature: gene Location: 176421-176585 bp Feature: gene Location: 176718-176915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)