myRT

myRT report for GCA_003434745.1_ASM343474v1

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Seq: QVIB01000102.1 Dorea longicatena strain AM25-9 AM25-9.Scaf102, whole genome shotgun sequence (703 bp)
Overview 1 RT 1: 66-528 bp Neighborhood of RT #1 [66, 701] RVT-GII GIIM Feature: gene Location: 66-701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72-237 bp Feature: domain Description: GIIM Note: maturase Location: 297-528 bp Feature: domain Description: GIIM Note: maturase Location: 297-528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVIB01000014.1 Dorea longicatena strain AM25-9 AM25-9.Scaf14, whole genome shotgun sequence (141484 bp)
Overview 1 RT 1: 58517-64346 bp 2 RT 2: 139994-141479 bp Neighborhood of RT #1 [58517, 64354] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 TnpV Neighborhood of RT #2 [139994, 141481] RVT-GII Feature: gene Location: 58517-59023 bp Feature: gene Location: 59278-59544 bp Feature: gene Location: 59583-61400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59847-60666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59847-60666 bp Feature: domain Description: Intron_maturas2 Location: 60738-61044 bp Feature: domain Description: Intron_maturas2 Location: 60738-61044 bp Feature: domain Description: HNHc Note: nucleases Location: 61221-61365 bp Feature: domain Description: HNHc Note: nucleases Location: 612 2 1-61365 bp Feature: gene Location: 61509-64013 bp Feature: domain Description: T4SS-DNA_transf Location: 61665-61965 bp Feature: domain Description: T4SS-DNA_transf Location: 61665-61965 bp Feature: domain Description: SR_TndX_transposase Location: 62151-62580 bp Feature: domain Description: SR_TndX_transposase Location: 62 151-62 580 bp Feature: domain Description: Recombinase Location: 62676-63036 bp Feature: domain Description: Recombinase Location: 62 676-63036 bp Feature: domain Description: Zn_ribbon_recom Location: 63081-63267 bp Feature: domain Description: Zn_ribbon_recom Location: 63081-632 67 bp Feature: domain Description: DUF4368 Location: 63543-63738 bp Feature: domain Description: DUF4368 Location: 63543-63738 bp Feature: gene Location: 64010-64354 bp Feature: domain Description: TnpV Location: 64022-64346 bp Feature: domain Description: TnpV Location: 6402 2 -64346 bp Feature: gene Location: 139994-140170 bp Feature: gene Location: 140488-140619 bp Feature: gene Location: 140780-141481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140984-141479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140984-141479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), T4SS-DNA_transf (pfam02534), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), TnpV (pfam14198)

Seq: QVIB01000003.1 Dorea longicatena strain AM25-9 AM25-9.Scaf3, whole genome shotgun sequence (264715 bp)
Overview 1 RT 1: 11393-14968 bp Neighborhood of RT #1 [11393, 14991] Cons_hypoth95 AIM24 RVT-Retrons DltE Feature: gene Location: 11393-11950 bp Feature: domain Description: Cons_hypoth95 Location: 11396-11924 bp Feature: domain Description: Cons_hypoth95 Location: 113 96-11924 bp Feature: gene Location: 12089-12766 bp Feature: domain Description: AIM24 Location: 12092-12755 bp Feature: domain Description: AIM24 Location: 12092-12755 bp Feature: gene Location: 12822-13859 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13029-13578 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 029-13 578 bp Feature: gene Location: 13915-14076 bp Feature: gene Location: 14182-14991 bp Feature: domain Description: DltE Location: 14215-14968 bp Feature: domain Description: DltE Location: 14215-14968 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cons_hypoth95 (pfam03602), AIM24 (pfam01987), RVT-Retrons, DltE (COG3967)

Seq: QVIB01000042.1 Dorea longicatena strain AM25-9 AM25-9.Scaf42, whole genome shotgun sequence (41785 bp)
Overview 1 RT 1: 33060-41220 bp Neighborhood of RT #1 [33060, 41663] COG5263 COG5263 COG5263 COG5263 COG5263 RVT-GII COG2865 COG5263 COG5263 COG5263 COG5263 Feature: gene Location: 33060-34202 bp Feature: domain Description: COG5263 Location: 33582-33771 bp Feature: domain Description: COG5263 Location: 33582-33771 bp Feature: domain Description: COG5263 Location: 33780-34197 bp Feature: domain Description: COG5263 Location: 33780-34 197 bp Feature: gene Location: 34315-36078 bp Feature: domain Description: COG5263 Location: 34393-34609 bp Feature: domain Description: COG5263 Location: 34 393-34 609 bp Feature: domain Description: COG5263 Location: 34651-34891 bp Feature: domain Description: COG5263 Location: 34 651-34 891 bp Feature: domain Description: COG5263 Location: 34954-35398 bp Feature: domain Description: COG5263 Location: 34 954 -35398 bp Feature: gene Location: 36807-38072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37056-37719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37056-37719 bp Feature: gene Location: 38214-39524 bp Feature: domain Description: COG2865 Location: 38262-39480 bp Feature: domain Description: COG2865 Location: 38262-394 80 bp Feature: gene Location: 39822-41663 bp Feature: domain Description: COG5263 Location: 39921-40131 bp Feature: domain Description: COG5263 Location: 39921-4 0131 bp Feature: domain Description: COG5263 Location: 40170-40401 bp Feature: domain Description: COG5263 Location: 4 0170-4 04 01 bp Feature: domain Description: COG5263 Location: 40488-40908 bp Feature: domain Description: COG5263 Location: 4 04 88-4 0908 bp Feature: domain Description: COG5263 Location: 41049-41220 bp Feature: domain Description: COG5263 Location: 4 104 9-4 1220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5263 (Glucan-binding domain (YG repeat) ), RVT-GII, COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: QVIB01000060.1 Dorea longicatena strain AM25-9 AM25-9.Scaf60, whole genome shotgun sequence (15982 bp)
Overview 1 RT 1: 13541-15860 bp Neighborhood of RT #1 [13541, 15979] RVT-GII HNHc Feature: gene Location: 13541-14161 bp Feature: gene Location: 14251-14412 bp Feature: gene Location: 14579-15979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14594-15140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 94-15 140 bp Feature: domain Description: HNHc Note: nucleases Location: 15695-15860 bp Feature: domain Description: HNHc Note: nucleases Location: 15 695 -15 860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QVIB01000063.1 Dorea longicatena strain AM25-9 AM25-9.Scaf63, whole genome shotgun sequence (11352 bp)
Overview 1 RT 1: 4041-7891 bp Neighborhood of RT #1 [4041, 7891] AbiTii RVT-Retrons Feature: gene Location: 4041-4676 bp Feature: domain Description: AbiTii Location: 4053-4587 bp Feature: domain Description: AbiTii Location: 4053-4587 bp Feature: gene Location: 5105-5443 bp Feature: gene Location: 5445-6458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5664-6216 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 56 6 4-6 216 bp Feature: gene Location: 6700-7029 bp Feature: gene Location: 7010-7891 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiTii (pfam18864), RVT-Retrons

Seq: QVIB01000078.1 Dorea longicatena strain AM25-9 AM25-9.Scaf78, whole genome shotgun sequence (3268 bp)
Overview 1 RT 1: 1827-3267 bp Neighborhood of RT #1 [1827, 3266] DUF3789 RVT-GII Feature: gene Location: 1827-1961 bp Feature: domain Description: DUF3789 Location: 1839-1932 bp Feature: domain Description: DUF37 89 Location: 1839-1932 bp Feature: gene Location: 2045-2194 bp Feature: gene Location: 2703-3266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3036-3267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3036-3267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3789 (pfam12664), RVT-GII