myRT

myRT report for GCA_003435125.1_ASM343512v1

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Seq: QWGI01000020.1 Clostridium sp. AM25-23AC AM25-23AC.Scaf20, whole genome shotgun sequence (68411 bp)
Overview 1 RT 1: 60984-63563 bp Neighborhood of RT #1 [60984, 63583] Phage_XkdX RVT-DGRs Phage_holin_Dp1 Feature: gene Location: 60984-61127 bp Feature: domain Description: Phage_XkdX Location: 61005-61122 bp Feature: domain Description: Phage_XkdX Location: 61 005-61 1 22 bp Feature: gene Location: 61211-61612 bp Feature: gene Location: 61825-63021 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62020-62743 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 62020-62743 bp Feature: gene Location: 63046-63381 bp Feature: gene Location: 63368-63583 bp Feature: domain Description: Phage_holin_Dp1 Location: 63377-63563 bp Feature: domain Description: Phage_holin_Dp1 Location: 63377-63563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_Dp1 (pfam16938)

Seq: QWGI01000027.1 Clostridium sp. AM25-23AC AM25-23AC.Scaf27, whole genome shotgun sequence (44372 bp)
Overview 1 RT 1: 40540-43416 bp Neighborhood of RT #1 [40540, 43754] INT_C_like_2 VirD4 RVT-GII Intron_maturas2 Feature: gene Location: 40540-41070 bp Feature: domain Description: INT_C_like_2 Location: 40546-41068 bp Feature: domain Description: INT_C_like_2 Location: 40546-41068 bp Feature: gene Location: 41449-41820 bp Feature: domain Description: VirD4 Location: 41464-41686 bp Feature: domain Description: VirD4 Location: 41464-41686 bp Feature: gene Location: 41967-43754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42201-43035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 2 01-43035 bp Feature: domain Description: Intron_maturas2 Location: 43113-43416 bp Feature: domain Description: Intron_maturas2 Location: 43113-43416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_C_like_2 (cd01191), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QWGI01000004.1 Clostridium sp. AM25-23AC AM25-23AC.Scaf4, whole genome shotgun sequence (196413 bp)
Overview 1 RT 1: 54014-57930 bp Neighborhood of RT #1 [54014, 57989] RVT-GII Intron_maturas2 HNHc Spr Feature: gene Location: 54014-54292 bp Feature: gene Location: 54351-54572 bp Feature: gene Location: 54615-56405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54882-55695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54882-55695 bp Feature: domain Description: Intron_maturas2 Location: 55770-56193 bp Feature: domain Description: Intron_maturas2 Location: 55770-56193 bp Feature: domain Description: HNHc Note: nucleases Location: 56232-56385 bp Feature: domain Description: HNHc Note: nucleases Location: 5623 2-563 85 bp Feature: gene Location: 56611-56856 bp Feature: gene Location: 56997-57989 bp Feature: domain Description: Spr Location: 57624-57930 bp Feature: domain Description: Spr Location: 57624-5793 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Spr (COG0791)

Seq: QWGI01000052.1 Clostridium sp. AM25-23AC AM25-23AC.Scaf52, whole genome shotgun sequence (6157 bp)
Overview 1 RT 1: 377-3038 bp Neighborhood of RT #1 [377, 3038] RVT-GII Feature: gene Location: 377-916 bp Feature: gene Location: 1151-1330 bp Feature: gene Location: 1544-1993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1547-1943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154 7-194 3 bp Feature: gene Location: 2060-2416 bp Feature: gene Location: 2352-3038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QWGI01000068.1 Clostridium sp. AM25-23AC AM25-23AC.Scaf68, whole genome shotgun sequence (3984 bp)
Overview 1 RT 1: 1-3926 bp Neighborhood of RT #1 [1, 3976] RVT-GII Intron_maturas2 HNHc T4SS-DNA_transf Feature: gene Location: 1-570 bp Feature: gene Location: 825-1091 bp Feature: gene Location: 1130-2947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1394-2213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1394-2213 bp Feature: domain Description: Intron_maturas2 Location: 2285-2588 bp Feature: domain Description: Intron_maturas2 Location: 2285 -25 88 bp Feature: domain Description: HNHc Note: nucleases Location: 2768-2912 bp Feature: domain Description: HNHc Note: nucleases Location: 2768-2912 bp Feature: gene Location: 3038-3976 bp Feature: domain Description: T4SS-DNA_transf Location: 3056-3926 bp Feature: domain Description: T4SS-DNA_transf Location: 305 6-3926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QWGI01000074.1 Clostridium sp. AM25-23AC AM25-23AC.Scaf74, whole genome shotgun sequence (3706 bp)
Overview 1 RT 1: 928-3276 bp Neighborhood of RT #1 [928, 3593] RVT-GII GIIM UbiG Feature: gene Location: 928-1197 bp Feature: gene Location: 1201-1374 bp Feature: gene Location: 1425-2723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1680-2373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 80-2373 bp Feature: domain Description: GIIM Note: maturase Location: 2433-2652 bp Feature: domain Description: GIIM Note: maturase Location: 2433-26 52 bp Feature: gene Location: 2844-3593 bp Feature: domain Description: UbiG Location: 2949-3276 bp Feature: domain Description: UbiG Location: 2949-3276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), UbiG (TIGR01983)