myRT

myRT report for GCA_003435175.1_ASM343517v1

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Seq: QVLX01000002.1 Sellimonas intestinalis strain AF37-2AT AF37-2AT.Scaf2, whole genome shotgun sequence (544340 bp)
Overview 1 RT 1: 97019-102537 bp 2 RT 2: 175036-180518 bp 3 RT 3: 186772-191699 bp Neighborhood of RT #1 [97019, 102537] HSDR_N_2 N6_Mtase RMtype1_S_EcoEI-TRD1-CR1_like RVT-GII GIIM KOG1577 Neighborhood of RT #2 [175036, 180518] NlpD PRK13914 RVT-GII HNHc Neighborhood of RT #3 [186772, 191699] TraG-D_C RVT-GII TraG_VirD4 Feature: gene Location: 97019-99460 bp Feature: domain Description: HSDR_N_2 Location: 97079-97391 bp Feature: domain Description: HSDR_N_2 Location: 97079-97391 bp Feature: domain Description: N6_Mtase Location: 97871-98756 bp Feature: domain Description: N6_Mtase Location: 97871 -98756 bp Feature: domain Description: RMtype1_S_EcoEI-TRD1-CR1_like Location: 98936-99422 bp Feature: domain Description: RMtype1 _S_EcoEI-TRD1 -CR1 _like Location: 98936-99422 bp Feature: gene Location: 99714-100097 bp Feature: gene Location: 100196-101479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 100400-101015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 00400-1 01 01 5 bp Feature: domain Description: GIIM Note: maturase Location: 101075-101306 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 075-1 01 306 bp Feature: gene Location: 101652-102074 bp Feature: domain Description: KOG1577 Location: 101859-102036 bp Feature: domain Description: KOG1 577 Location: 1 01 859-1 02036 bp Feature: gene Location: 102388-102537 bp Feature: gene Location: 175036-177498 bp Feature: domain Description: NlpD Location: 176524-177019 bp Feature: domain Description: NlpD Location: 1 76524-1 7701 9 bp Feature: domain Description: PRK13914 Location: 177130-177487 bp Feature: domain Description: PRK1 391 4 Location: 1 771 30-1 77487 bp Feature: gene Location: 177586-177801 bp Feature: gene Location: 177981-179864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 178317-179034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7831 7-1 79034 bp Feature: domain Description: HNHc Note: nucleases Location: 179616-179754 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7961 6-1 79754 bp Feature: gene Location: 180063-180311 bp Feature: gene Location: 180321-180518 bp Feature: gene Location: 186772-187734 bp Feature: domain Description: TraG-D_C Location: 187150-187504 bp Feature: domain Description: TraG-D_C Location: 1 871 50-1 87504 bp Feature: gene Location: 187787-187936 bp Feature: gene Location: 187967-189874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188297-189041 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 88297-1 89041 bp Feature: gene Location: 190520-190993 bp Feature: domain Description: TraG_VirD4 Location: 190607-190937 bp Feature: domain Description: TraG_VirD4 Location: 1 90607-1 90937 bp Feature: gene Location: 191223-191699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KOG1577 (KOG1577, Aldo/keto reductase family proteins ), HSDR_N_2 (pfam13588), N6_Mtase (pfam02384), RMtype1_S_EcoEI-TRD1-CR1_like (cd17260), NlpD (COG0739), PRK13914 (invasion associated endopeptidase), HNHc (smart00507), TraG-D_C (pfam12696)
TraG_VirD4