myRT

myRT report for GCA_003435205.1_ASM343520v1

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Seq: QVLZ01000010.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf10, whole genome shotgun sequence (200257 bp)
Overview 1 RT 1: 6901-12100 bp Neighborhood of RT #1 [6901, 12126] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 6901-7251 bp Feature: domain Description: DUF4133 Location: 6916-7186 bp Feature: domain Description: DUF41 33 Location: 691 6-71 86 bp Feature: gene Location: 7481-9298 bp Feature: domain Description: Bac_Flav_CT_G Location: 7484-9242 bp Feature: domain Description: Bac_Flav_CT_G Location: 7484-9242 bp Feature: gene Location: 9869-11515 bp Feature: domain Description: RVT_N Location: 9923-10166 bp Feature: domain Description: RVT_N Location: 9923-1 01 66 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10211-10856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 021 1 -1 0856 bp Feature: domain Description: GIIM Note: maturase Location: 10910-11141 bp Feature: domain Description: GIIM Note: maturase Location: 1 091 0-1 1 1 41 bp Feature: gene Location: 11524-11934 bp Feature: domain Description: Bac_Flav_CT_G Location: 11641-11932 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 641 -1 1 932 bp Feature: gene Location: 11941-12126 bp Feature: domain Description: Bac_Flav_CT_G Location: 11944-12100 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 944-1 21 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QVLZ01000012.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf12, whole genome shotgun sequence (173785 bp)
Overview 1 RT 1: 27039-29962 bp Neighborhood of RT #1 [27039, 29991] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 27039-27521 bp Feature: gene Location: 27590-27763 bp Feature: gene Location: 27829-29079 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28222-28819 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 82 2 2 -2 8819 bp Feature: gene Location: 29331-29642 bp Feature: domain Description: HTH_XRE Location: 29445-29601 bp Feature: domain Description: HTH_XRE Location: 2 9445-2 9601 bp Feature: gene Location: 29647-29991 bp Feature: domain Description: Gp49 Location: 29701-29962 bp Feature: domain Description: Gp49 Location: 2 9701-2 9962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: QVLZ01000016.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf16, whole genome shotgun sequence (137659 bp)
Overview 1 RT 1: 2245-6084 bp 2 RT 2: 11819-14899 bp Neighborhood of RT #1 [2245, 6084] TraG-D_C RVT_N RVT-GII GIIM Neighborhood of RT #2 [11819, 14943] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 2245-2640 bp Feature: gene Location: 2756-3961 bp Feature: domain Description: TraG-D_C Location: 3338-3671 bp Feature: domain Description: TraG-D_C Location: 3 3 3 8-3 671 bp Feature: gene Location: 3966-5618 bp Feature: domain Description: RVT_N Location: 4020-4263 bp Feature: domain Description: RVT_N Location: 4020-4263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4308-4956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 08-4956 bp Feature: domain Description: GIIM Note: maturase Location: 5010-5241 bp Feature: domain Description: GIIM Note: maturase Location: 5010-5241 bp Feature: gene Location: 5700-5873 bp Feature: gene Location: 5935-6084 bp Feature: gene Location: 11819-11953 bp Feature: domain Description: DUF4134 Location: 11840-11948 bp Feature: domain Description: DUF413 4 Location: 11840-11948 bp Feature: gene Location: 12125-12319 bp Feature: gene Location: 12483-14321 bp Feature: domain Description: RVT_N Location: 12678-12921 bp Feature: domain Description: RVT_N Location: 12678-12921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12966-13632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12966-13 63 2 bp Feature: domain Description: GIIM Note: maturase Location: 13689-13923 bp Feature: domain Description: GIIM Note: maturase Location: 13 689-13 923 bp Feature: gene Location: 14318-14608 bp Feature: domain Description: DUF4134 Location: 14441-14603 bp Feature: domain Description: DUF413 4 Location: 14441-14603 bp Feature: gene Location: 14620-14943 bp Feature: domain Description: DUF4133 Location: 14635-14899 bp Feature: domain Description: DUF413 3 Location: 1463 5-14899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572), DUF4133 (pfam13571)

Seq: QVLZ01000019.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf19, whole genome shotgun sequence (127259 bp)
Overview 1 RT 1: 48393-60823 bp Neighborhood of RT #1 [48393, 60939] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 48393-48872 bp Feature: gene Location: 49538-51745 bp Feature: gene Location: 51951-53081 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52272-52815 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52272-52815 bp Feature: gene Location: 53083-59040 bp Feature: domain Description: DUF4011 Location: 54313-54826 bp Feature: domain Description: DUF4 011 Location: 54 313-54 826 bp Feature: domain Description: DEXXQc_SF1 Location: 55165-56026 bp Feature: domain Description: DEXXQc_SF1 Location: 55165-56026 bp Feature: domain Description: DEXXQc_SF1 Location: 56593-57352 bp Feature: domain Description: DEXXQc_SF1 Location: 56593-57352 bp Feature: domain Description: TIGR00376 Location: 57481-57871 bp Feature: domain Description: TIGR00376 Location: 574 81-57871 bp Feature: domain Description: MTES_1575 Location: 58024-58309 bp Feature: domain Description: MTES_1575 Location: 58024 -58309 bp Feature: domain Description: DUF3320 Location: 58549-58690 bp Feature: domain Description: DUF3320 Location: 5854 9-58690 bp Feature: gene Location: 59137-60939 bp Feature: domain Description: rpsA Location: 59206-60823 bp Feature: domain Description: rpsA Location: 59206-60823 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QVLZ01000020.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf20, whole genome shotgun sequence (125392 bp)
Overview 1 RT 1: 85043-88976 bp Neighborhood of RT #1 [85043, 88976] RVT-UG27 Feature: gene Location: 85043-85690 bp Feature: gene Location: 85704-86372 bp Feature: gene Location: 86365-87627 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 86557-87193 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 865 5 7-87193 bp Feature: gene Location: 87950-88447 bp Feature: gene Location: 88497-88976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QVLZ01000025.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf25, whole genome shotgun sequence (99228 bp)
Overview 1 RT 1: 36543-46773 bp Neighborhood of RT #1 [36543, 46773] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 36543-42572 bp Feature: domain Description: DUF1566 Location: 42258-42561 bp Feature: domain Description: DUF156 6 Location: 42258-4256 1 bp Feature: gene Location: 42702-43103 bp Feature: domain Description: Avd_like Location: 42741-43080 bp Feature: domain Description: Avd_like Location: 42741-43080 bp Feature: gene Location: 43116-44537 bp Feature: domain Description: DUF1566 Location: 43188-43332 bp Feature: domain Description: DUF156 6 Location: 43188-43332 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43521-44262 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 43521-4426 2 bp Feature: gene Location: 44528-44881 bp Feature: gene Location: 44944-46773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: QVLZ01000003.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf3, whole genome shotgun sequence (271835 bp)
Overview 1 RT 1: 98384-102174 bp 2 RT 2: 153044-156575 bp Neighborhood of RT #1 [98384, 102200] RpoE RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [153044, 156575] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 98384-98854 bp Feature: domain Description: RpoE Location: 98387-98843 bp Feature: domain Description: RpoE Location: 98387 -98843 bp Feature: gene Location: 99185-99460 bp Feature: gene Location: 99426-100847 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 99798-100503 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 997 98-100503 bp Feature: gene Location: 100862-101242 bp Feature: domain Description: Avd_like Location: 100889-101195 bp Feature: domain Description: Avd_like Location: 100889-101195 bp Feature: gene Location: 101388-102200 bp Feature: domain Description: DUF1566 Location: 101922-102174 bp Feature: domain Description: DUF1566 Location: 101922-10217 4 bp Feature: gene Location: 153044-153853 bp Feature: domain Description: DUF1566 Location: 153575-153824 bp Feature: domain Description: DUF1566 Location: 15357 5-153824 bp Feature: gene Location: 154000-154407 bp Feature: domain Description: Avd_like Location: 154033-154342 bp Feature: domain Description: Avd_like Location: 154033-154342 bp Feature: gene Location: 154422-155843 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 154797-155499 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1547 97 -155499 bp Feature: gene Location: 155806-156084 bp Feature: gene Location: 156282-156575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpoE (COG3343), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: QVLZ01000032.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf32, whole genome shotgun sequence (79139 bp)
Overview 1 RT 1: 9428-14620 bp Neighborhood of RT #1 [9428, 14631] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 9428-10366 bp Feature: domain Description: Bac_Flav_CT_G Location: 9431-10352 bp Feature: domain Description: Bac_Flav_CT_G Location: 9431-10352 bp Feature: gene Location: 10545-10694 bp Feature: gene Location: 10950-12611 bp Feature: domain Description: RVT_N Location: 11004-11247 bp Feature: domain Description: RVT_N Location: 11004-11247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11292-11940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11292-11940 bp Feature: domain Description: GIIM Note: maturase Location: 11994-12225 bp Feature: domain Description: GIIM Note: maturase Location: 11994-12225 bp Feature: gene Location: 12608-14302 bp Feature: domain Description: Bac_Flav_CT_G Location: 12728-14294 bp Feature: domain Description: Bac_Flav_CT_G Location: 12728 -14294 bp Feature: gene Location: 14317-14631 bp Feature: domain Description: DUF3876 Location: 14371-14620 bp Feature: domain Description: DUF38 76 Location: 14371-14620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QVLZ01000036.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf36, whole genome shotgun sequence (74468 bp)
Overview 1 RT 1: 1345-4360 bp Neighborhood of RT #1 [1345, 4360] BACON RVT-GII GIIM RVT-GII Feature: gene Location: 1345-1740 bp Feature: domain Description: BACON Location: 1450-1729 bp Feature: domain Description: BACON Location: 1450-1729 bp Feature: gene Location: 1749-1955 bp Feature: gene Location: 2274-3137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2295-2700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229 5-2700 bp Feature: domain Description: GIIM Note: maturase Location: 2709-2940 bp Feature: domain Description: GIIM Note: maturase Location: 2709 -29 40 bp Feature: gene Location: 3140-3628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3476-3614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3476-3614 bp Feature: gene Location: 3918-4163 bp Feature: gene Location: 4232-4360 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BACON (pfam13004), RVT-GII, GIIM (pfam08388)

Seq: QVLZ01000037.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf37, whole genome shotgun sequence (66815 bp)
Overview 1 RT 1: 21084-26406 bp Neighborhood of RT #1 [21084, 30527] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 21084-21326 bp Feature: gene Location: 21506-21991 bp Feature: gene Location: 21988-23292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22201-22795 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22201-22795 bp Feature: gene Location: 23394-23612 bp Feature: gene Location: 23808-30527 bp Feature: domain Description: Laminin_G_3 Location: 25251-25329 bp Feature: domain Description: Laminin_G_3 Location: 25251-25329 bp Feature: domain Description: Laminin_G_3 Location: 25980-26406 bp Feature: domain Description: Laminin_G_3 Location: 25980-26406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QVLZ01000039.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf39, whole genome shotgun sequence (62897 bp)
Overview 1 RT 1: 10463-13194 bp Neighborhood of RT #1 [10463, 13194] RVT-UG27 Feature: gene Location: 10463-11074 bp Feature: gene Location: 11157-11387 bp Feature: gene Location: 11384-12652 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 11573-12209 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 11 573-12209 bp Feature: gene Location: 12693-12827 bp Feature: gene Location: 12967-13194 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QVLZ01000045.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf45, whole genome shotgun sequence (55125 bp)
Overview 1 RT 1: 1683-3226 bp Neighborhood of RT #1 [1683, 3226] HTH_28 RVT-GII Feature: gene Location: 1683-1835 bp Feature: gene Location: 2013-2303 bp Feature: domain Description: HTH_28 Location: 2037-2181 bp Feature: domain Description: HTH_28 Location: 2037-2181 bp Feature: gene Location: 2424-2621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427-2619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427-2619 bp Feature: gene Location: 2651-2860 bp Feature: gene Location: 2864-3226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: QVLZ01000049.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf49, whole genome shotgun sequence (49532 bp)
Overview 1 RT 1: 6796-11737 bp Neighborhood of RT #1 [6796, 11793] RVT-Retrons Phage_int_SAM_5 INTN1_C_like NGN_SP_UpxY KOW_NusG Feature: gene Location: 6796-7440 bp Feature: gene Location: 7418-7975 bp Feature: gene Location: 8188-9636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8389-8974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8389-8974 bp Feature: gene Location: 9915-10880 bp Feature: domain Description: Phage_int_SAM_5 Location: 9948-10203 bp Feature: domain Description: Phage_int_SAM_5 Location: 9948-10203 bp Feature: domain Description: INTN1_C_like Location: 10308-10785 bp Feature: domain Description: INTN1_C_like Location: 10308-10785 bp Feature: gene Location: 11215-11793 bp Feature: domain Description: NGN_SP_UpxY Location: 11293-11575 bp Feature: domain Description: NGN_SP_UpxY Location: 11293-11575 bp Feature: domain Description: KOW_NusG Location: 11626-11737 bp Feature: domain Description: KOW_NusG Location: 11626-11737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091)

Seq: QVLZ01000057.1 Bacteroides sp. AF32-8BH AF32-8BH.Scaf57, whole genome shotgun sequence (40775 bp)
Overview 1 RT 1: 30592-39337 bp Neighborhood of RT #1 [30592, 39798] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 Feature: gene Location: 30592-30849 bp Feature: domain Description: DUF4134 Location: 30655-30835 bp Feature: domain Description: DUF4134 Location: 30655-30835 bp Feature: gene Location: 30974-31183 bp Feature: gene Location: 31465-33120 bp Feature: domain Description: RVT_N Location: 31522-31759 bp Feature: domain Description: RVT_N Location: 31522-31759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31810-32458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31810-32458 bp Feature: domain Description: GIIM Note: maturase Location: 32515-32746 bp Feature: domain Description: GIIM Note: maturase Location: 32515-32746 bp Feature: gene Location: 33117-33359 bp Feature: domain Description: DUF4134 Location: 33264-33354 bp Feature: domain Description: DUF4134 Location: 33264-33354 bp Feature: gene Location: 33370-33702 bp Feature: domain Description: DUF4133 Location: 33388-33658 bp Feature: domain Description: DUF4133 Location: 33388-33658 bp Feature: gene Location: 33699-36098 bp Feature: domain Description: Bac_Flav_CT_G Location: 33702-36090 bp Feature: domain Description: Bac_Flav_CT_G Location: 33702-36090 bp Feature: gene Location: 36667-38490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36931-37753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36931-37753 bp Feature: domain Description: Intron_maturas2 Location: 37927-38170 bp Feature: domain Description: Intron_maturas2 Location: 37927-38170 bp Feature: domain Description: HNHc Note: nucleases Location: 38281-38452 bp Feature: domain Description: HNHc Note: nucleases Location: 38281-38452 bp Feature: gene Location: 38755-39138 bp Feature: domain Description: DUF3876 Location: 38836-39100 bp Feature: domain Description: DUF3876 Location: 38836-39100 bp Feature: gene Location: 39142-39798 bp Feature: domain Description: DUF4141 Location: 39181-39337 bp Feature: domain Description: DUF414 1 Location: 39181-39337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605)