myRT

myRT report for GCA_003435225.1_ASM343522v1

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Seq: QWGJ01000001.1 Clostridium sp. AF28-12 AF28-12.Scaf1, whole genome shotgun sequence (464033 bp)
Overview 1 RT 1: 429682-432521 bp Neighborhood of RT #1 [429682, 432616] Avd_like RVT-DGRs PRK13387 Feature: gene Location: 429682-430128 bp Feature: domain Description: Avd_like Location: 429769-430087 bp Feature: domain Description: Avd_like Location: 429769-430087 bp Feature: gene Location: 430198-430329 bp Feature: gene Location: 430570-431784 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 430780-431443 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 430780-431 443 bp Feature: gene Location: 431762-432214 bp Feature: gene Location: 432233-432616 bp Feature: domain Description: PRK13387 Location: 432239-432521 bp Feature: domain Description: PRK1 3387 Location: 432239-432521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, PRK13387 (1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional)

Seq: QWGJ01000014.1 Clostridium sp. AF28-12 AF28-12.Scaf14, whole genome shotgun sequence (108287 bp)
Overview 1 RT 1: 1-3778 bp Neighborhood of RT #1 [1, 3945] RVT-GII Intron_maturas2 HNHc IME4 PrgI Feature: gene Location: 1-231 bp Feature: gene Location: 653-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1748 bp Feature: domain Description: Intron_maturas2 Location: 1820-2135 bp Feature: domain Description: Intron_maturas2 Location: 182 0-2 135 bp Feature: domain Description: HNHc Note: nucleases Location: 2303-2456 bp Feature: domain Description: HNHc Note: nucleases Location: 2 303-2 456 bp Feature: gene Location: 2930-3475 bp Feature: domain Description: IME4 Location: 2939-3458 bp Feature: domain Description: IME4 Location: 2 939-3458 bp Feature: gene Location: 3490-3945 bp Feature: domain Description: PrgI Location: 3505-3778 bp Feature: domain Description: PrgI Location: 3505-3778 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IME4 (COG4725), PrgI (pfam12666), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QWGJ01000018.1 Clostridium sp. AF28-12 AF28-12.Scaf18, whole genome shotgun sequence (49048 bp)
Overview 1 RT 1: 23008-28420 bp Neighborhood of RT #1 [23008, 28536] COG1373 COG1373 RVT-GII HNHc HTH_XRE COG1342 MTH1175 Feature: gene Location: 23008-23661 bp Feature: domain Description: COG1373 Location: 23011-23656 bp Feature: domain Description: COG13 73 Location: 23 011-23 656 bp Feature: gene Location: 23671-23856 bp Feature: domain Description: COG1373 Location: 23674-23845 bp Feature: domain Description: COG13 73 Location: 23 674-23 845 bp Feature: gene Location: 24845-26731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25178-25916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25178-25916 bp Feature: domain Description: HNHc Note: nucleases Location: 26453-26615 bp Feature: domain Description: HNHc Note: nucleases Location: 26453 -26615 bp Feature: gene Location: 26974-27369 bp Feature: domain Description: HTH_XRE Location: 27106-27280 bp Feature: domain Description: HTH_XRE Location: 27106-27280 bp Feature: gene Location: 27757-28536 bp Feature: domain Description: COG1342 Location: 27760-28039 bp Feature: domain Description: COG13 42 Location: 27760-2803 9 bp Feature: domain Description: MTH1175 Location: 28138-28420 bp Feature: domain Description: MTH1175 Location: 2813 8-28420 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), COG1342 (Predicted DNA-binding protein, UPF0251 family ), MTH1175

Seq: QWGJ01000034.1 Clostridium sp. AF28-12 AF28-12.Scaf34, whole genome shotgun sequence (8635 bp)
Overview 1 RT 1: 4948-8331 bp Neighborhood of RT #1 [4948, 8331] RVT-GII Feature: gene Location: 4948-5487 bp Feature: gene Location: 5656-5901 bp Feature: gene Location: 5991-7286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6246-6933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624 6-6933 bp Feature: gene Location: 7353-7709 bp Feature: gene Location: 7645-8331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QWGJ01000055.1 Clostridium sp. AF28-12 AF28-12.Scaf55, whole genome shotgun sequence (2508 bp)
Overview 1 RT 1: 282-2369 bp Neighborhood of RT #1 [282, 2404] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 282-548 bp Feature: gene Location: 587-2404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 851-1670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85 1-1670 bp Feature: domain Description: Intron_maturas2 Location: 1742-2045 bp Feature: domain Description: Intron_maturas2 Location: 1742-2045 bp Feature: domain Description: HNHc Note: nucleases Location: 2225-2369 bp Feature: domain Description: HNHc Note: nucleases Location: 2225 -2369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)