myRT

myRT report for GCA_003435255.1_ASM343525v1

Download annotations/find similar RTs

Seq: QVMA01000011.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf11, whole genome shotgun sequence (117148 bp)
Overview 1 RT 1: 115491-117034 bp Neighborhood of RT #1 [115491, 117034] RVT-GII HTH_28 Feature: gene Location: 115491-115853 bp Feature: gene Location: 115857-116066 bp Feature: gene Location: 116096-116293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116099-116291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 6099-1 1 6291 bp Feature: gene Location: 116414-116704 bp Feature: domain Description: HTH_28 Location: 116438-116582 bp Feature: domain Description: HTH_28 Location: 1 1 6438-1 1 6582 bp Feature: gene Location: 116882-117034 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: QVMA01000200.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf200, whole genome shotgun sequence (2429 bp)
Overview 1 RT 1: 146-2426 bp Neighborhood of RT #1 [146, 2426] RVT_N RVT-GII GIIM Feature: gene Location: 146-355 bp Feature: gene Location: 637-2292 bp Feature: domain Description: RVT_N Location: 694-931 bp Feature: domain Description: RVT_N Location: 694-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982-1630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982 -1630 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Feature: gene Location: 2295-2426 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QVMA01000213.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf213, whole genome shotgun sequence (2029 bp)
Overview 1 RT 1: 3-1249 bp Neighborhood of RT #1 [3, 1737] RVT-DGRs Feature: gene Location: 3-380 bp Feature: gene Location: 382-1737 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 658-1249 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 658-1249 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QVMA01000025.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf25, whole genome shotgun sequence (75956 bp)
Overview 1 RT 1: 42874-50095 bp Neighborhood of RT #1 [42874, 51132] N6_Mtase COG4646 RVT-GII Intron_maturas2 COG4646 COG4646 Helicase_C Feature: gene Location: 42874-43926 bp Feature: domain Description: N6_Mtase Location: 43186-43786 bp Feature: domain Description: N6_Mtase Location: 4 3186-4 3786 bp Feature: gene Location: 43967-46042 bp Feature: domain Description: COG4646 Location: 45197-45974 bp Feature: domain Description: COG4 64 6 Location: 4 5197-4 5974 bp Feature: gene Location: 46642-48444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46906-47728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6906-4 7728 bp Feature: domain Description: Intron_maturas2 Location: 47878-48112 bp Feature: domain Description: Intron_maturas2 Location: 4 7878-4 8112 bp Feature: gene Location: 48431-48733 bp Feature: domain Description: COG4646 Location: 48545-48725 bp Feature: domain Description: COG4 64 6 Location: 4 854 5-4 8725 bp Feature: gene Location: 48793-51132 bp Feature: domain Description: COG4646 Location: 48853-49684 bp Feature: domain Description: COG4 64 6 Location: 4 8853-4 9684 bp Feature: domain Description: Helicase_C Location: 49888-50095 bp Feature: domain Description: Helicase_C Location: 4 9888-50095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271)

Seq: QVMA01000003.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf3, whole genome shotgun sequence (168898 bp)
Overview 1 RT 1: 91381-97413 bp Neighborhood of RT #1 [91381, 97430] RVT-Retrons DNA2 MTES_1575 DUF3320 Feature: gene Location: 91381-91854 bp Feature: gene Location: 92520-94727 bp Feature: gene Location: 94932-96062 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95253-95796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 95 25 3-95 796 bp Feature: gene Location: 96064-96432 bp Feature: gene Location: 96417-97430 bp Feature: domain Description: DNA2 Location: 96525-96705 bp Feature: domain Description: DNA2 Location: 965 25 -96705 bp Feature: domain Description: MTES_1575 Location: 96768-97053 bp Feature: domain Description: MTES_15 75 Location: 96768-9705 3 bp Feature: domain Description: DUF3320 Location: 97293-97413 bp Feature: domain Description: DUF3320 Location: 97293-97413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DNA2 (COG1112), MTES_1575 (pfam18741), DUF3320 (pfam11784)

Seq: QVMA01000079.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf79, whole genome shotgun sequence (27682 bp)
Overview 1 RT 1: 14536-18205 bp Neighborhood of RT #1 [14536, 18205] RVT-UG27 Feature: gene Location: 14536-14994 bp Feature: gene Location: 15487-15699 bp Feature: gene Location: 16016-17284 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 16205-16841 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 16 205-16 841 bp Feature: gene Location: 17281-17511 bp Feature: gene Location: 17594-18205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QVMA01000086.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf86, whole genome shotgun sequence (24275 bp)
Overview 1 RT 1: 8442-13357 bp Neighborhood of RT #1 [8442, 13818] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 8442-10271 bp Feature: domain Description: Bac_Flav_CT_G Location: 8445-10257 bp Feature: domain Description: Bac_Flav_CT_G Location: 8445-10257 bp Feature: gene Location: 10299-10472 bp Feature: gene Location: 10818-12629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11082-11904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11082-11904 bp Feature: domain Description: Intron_maturas2 Location: 11979-12294 bp Feature: domain Description: Intron_maturas2 Location: 1197 9-12294 bp Feature: domain Description: HNHc Note: nucleases Location: 12450-12600 bp Feature: domain Description: HNHc Note: nucleases Location: 12450-12600 bp Feature: gene Location: 12686-13165 bp Feature: domain Description: Bac_Flav_CT_G Location: 12719-13151 bp Feature: domain Description: Bac_Flav_CT_G Location: 127 19-13151 bp Feature: gene Location: 13186-13818 bp Feature: domain Description: DUF4141 Location: 13210-13357 bp Feature: domain Description: DUF4141 Location: 13210-13357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: QVMA01000091.1 Bacteroides sp. AM56-10ce AM56-10ce.Scaf91, whole genome shotgun sequence (22401 bp)
Overview 1 RT 1: 12500-22358 bp Neighborhood of RT #1 [12500, 22358] DUF1566 Avd_like DUF1566 RVT-DGRs Feature: gene Location: 12500-18532 bp Feature: domain Description: DUF1566 Location: 18215-18521 bp Feature: domain Description: DUF1566 Location: 18 215-18 521 bp Feature: gene Location: 18662-19063 bp Feature: domain Description: Avd_like Location: 18701-19040 bp Feature: domain Description: Avd_like Location: 18 701-19040 bp Feature: gene Location: 19076-20500 bp Feature: domain Description: DUF1566 Location: 19148-19295 bp Feature: domain Description: DUF1566 Location: 19148 -19295 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19484-20225 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1948 4-20225 bp Feature: gene Location: 20491-20844 bp Feature: gene Location: 20907-22358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs