myRT

myRT report for GCA_003435265.1_ASM343526v1

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Seq: QVLU01000001.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf1, whole genome shotgun sequence (448793 bp)
Overview 1 RT 1: 396781-401611 bp Neighborhood of RT #1 [396781, 401619] HTH_XRE RVT-GII MhpC BaeS Feature: gene Location: 396781-397212 bp Feature: gene Location: 397645-397941 bp Feature: domain Description: HTH_XRE Location: 397663-397822 bp Feature: domain Description: HTH_XRE Location: 397663-397822 bp Feature: gene Location: 398125-398343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 398134-398311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3981 34-39831 1 bp Feature: gene Location: 398573-399913 bp Feature: domain Description: MhpC Location: 398972-399785 bp Feature: domain Description: MhpC Location: 398972-399785 bp Feature: gene Location: 400039-401619 bp Feature: domain Description: BaeS Location: 400846-401611 bp Feature: domain Description: BaeS Location: 400846-401 61 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-GII, MhpC (COG0596), BaeS (COG0642)

Seq: QVLU01000012.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf12, whole genome shotgun sequence (178848 bp)
Overview 1 RT 1: 493-3099 bp Neighborhood of RT #1 [493, 3099] RVT-UG2 Feature: gene Location: 493-1839 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 691-1528 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 691-152 8 bp Feature: gene Location: 2415-2555 bp Feature: gene Location: 2575-3099 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG2

Seq: QVLU01000014.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf14, whole genome shotgun sequence (172082 bp)
Overview 1 RT 1: 106614-111174 bp Neighborhood of RT #1 [106614, 111182] Spr RVT-GII Intron_maturas2 HNHc DUF4315 Feature: gene Location: 106614-108266 bp Feature: domain Description: Spr Location: 107973-108249 bp Feature: domain Description: Spr Location: 107973 -108249 bp Feature: gene Location: 108425-108679 bp Feature: gene Location: 108885-110681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109152-109962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109152-109962 bp Feature: domain Description: Intron_maturas2 Location: 110028-110340 bp Feature: domain Description: Intron_maturas2 Location: 110028-1103 40 bp Feature: domain Description: HNHc Note: nucleases Location: 110499-110655 bp Feature: domain Description: HNHc Note: nucleases Location: 110499-110655 bp Feature: gene Location: 110709-110903 bp Feature: gene Location: 110925-111182 bp Feature: domain Description: DUF4315 Location: 110937-111174 bp Feature: domain Description: DUF43 15 Location: 11093 7-111174 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4315 (pfam14193)

Seq: QVLU01000020.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf20, whole genome shotgun sequence (129229 bp)
Overview 1 RT 1: 63204-68495 bp Neighborhood of RT #1 [63204, 68551] POMP_repeat POMP_repeat POMP_repeat POMP_repeat POMP_repeat POMP_repeat POMP_repeat Flg_new RVT-Retrons MPP_AQ1575 VOC Feature: gene Location: 63204-65837 bp Feature: domain Description: POMP_repeat Location: 63717-63771 bp Feature: domain Description: POMP_repeat Location: 63717-63771 bp Feature: domain Description: POMP_repeat Location: 63810-63867 bp Feature: domain Description: POMP_repeat Location: 63810-63867 bp Feature: domain Description: POMP_repeat Location: 64287-64335 bp Feature: domain Description: POMP_repeat Location: 64 287-64 335 bp Feature: domain Description: POMP_repeat Location: 64383-64422 bp Feature: domain Description: POMP_repeat Location: 64 383-64 4 22 bp Feature: domain Description: POMP_repeat Location: 64470-64512 bp Feature: domain Description: POMP_repeat Location: 64 4 70-64 512 bp Feature: domain Description: POMP_repeat Location: 64647-64689 bp Feature: domain Description: POMP_repeat Location: 64 64 7-64 689 bp Feature: domain Description: POMP_repeat Location: 64740-64791 bp Feature: domain Description: POMP_repeat Location: 64 74 0-64 791 bp Feature: domain Description: Flg_new Location: 65532-65730 bp Feature: domain Description: Flg_new Location: 65532-65730 bp Feature: gene Location: 66149-66280 bp Feature: gene Location: 66420-67406 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66591-67143 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66591-6714 3 bp Feature: gene Location: 67428-68039 bp Feature: domain Description: MPP_AQ1575 Location: 67434-67875 bp Feature: domain Description: MPP_AQ1575 Location: 674 34 -67875 bp Feature: gene Location: 68114-68551 bp Feature: domain Description: VOC Location: 68144-68495 bp Feature: domain Description: VOC Location: 6814 4 -684 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT POMP_repeat (TIGR01376), Flg_new (pfam09479), RVT-Retrons, MPP_AQ1575 (cd07390), VOC (cl14632)

Seq: QVLU01000038.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf38, whole genome shotgun sequence (52674 bp)
Overview 1 RT 1: 32404-37982 bp Neighborhood of RT #1 [32404, 38020] RVT-GII Intron_maturas2 VirB4_CagE TraC-F-type Feature: gene Location: 32404-33213 bp Feature: gene Location: 33131-33481 bp Feature: gene Location: 33590-35380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33857-34670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3385 7-34670 bp Feature: domain Description: Intron_maturas2 Location: 34754-35048 bp Feature: domain Description: Intron_maturas2 Location: 3475 4-35 048 bp Feature: gene Location: 35649-35834 bp Feature: gene Location: 35873-38020 bp Feature: domain Description: VirB4_CagE Location: 35966-36203 bp Feature: domain Description: VirB4_CagE Location: 35 966-36203 bp Feature: domain Description: TraC-F-type Location: 36641-37982 bp Feature: domain Description: TraC-F-type Location: 36641-37982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), VirB4_CagE (TIGR00929), TraC-F-type (TIGR02746)

Seq: QVLU01000061.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf61, whole genome shotgun sequence (18985 bp)
Overview 1 RT 1: 14091-18706 bp Neighborhood of RT #1 [14091, 18706] SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 14091-15971 bp Feature: domain Description: SR_TndX_transposase Location: 14115-14523 bp Feature: domain Description: SR_TndX_transposase Location: 14115-14523 bp Feature: domain Description: Recombinase Location: 14622-14985 bp Feature: domain Description: Recombinase Location: 146 22-14985 bp Feature: domain Description: Zn_ribbon_recom Location: 15027-15210 bp Feature: domain Description: Zn_ribbon_recom Location: 15027-15210 bp Feature: domain Description: DUF4368 Location: 15495-15681 bp Feature: domain Description: DUF436 8 Location: 15495-156 81 bp Feature: gene Location: 16044-16370 bp Feature: gene Location: 16442-18232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16718-17525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 718-17525 bp Feature: domain Description: Intron_maturas2 Location: 17702-17894 bp Feature: domain Description: Intron_maturas2 Location: 17702-17894 bp Feature: domain Description: HNHc Note: nucleases Location: 18068-18212 bp Feature: domain Description: HNHc Note: nucleases Location: 1806 8-18212 bp Feature: gene Location: 18248-18706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QVLU01000073.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf73, whole genome shotgun sequence (5995 bp)
Overview 1 RT 1: 118-2290 bp Neighborhood of RT #1 [118, 2290] RVT-GII Intron_maturas2 Feature: gene Location: 118-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1213 bp Feature: domain Description: Intron_maturas2 Location: 1282-1609 bp Feature: domain Description: Intron_maturas2 Location: 1282-1609 bp Feature: gene Location: 1931-2068 bp Feature: gene Location: 2102-2290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QVLU01000085.1 Eisenbergiella massiliensis strain AF26-4BH AF26-4BH.Scaf85, whole genome shotgun sequence (2383 bp)
Overview 1 RT 1: 115-2326 bp Neighborhood of RT #1 [115, 2326] RVT_N RVT-GII GIIM Feature: gene Location: 115-1779 bp Feature: domain Description: RVT_N Location: 160-403 bp Feature: domain Description: RVT_N Location: 160-403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448 -1099 bp Feature: domain Description: GIIM Note: maturase Location: 1150-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1150-138 4 bp Feature: gene Location: 2054-2326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)