myRT

myRT report for GCA_003435325.1_ASM343532v1

Download annotations/find similar RTs

Seq: QWGK01000001.1 Clostridiaceae bacterium AF02-42 AF02-42.Scaf1, whole genome shotgun sequence (525019 bp)
Overview 1 RT 1: 329590-333117 bp 2 RT 2: 488091-490927 bp Neighborhood of RT #1 [329590, 333206] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Neighborhood of RT #2 [488091, 491022] Avd_like RVT-DGRs PRK13387 Feature: gene Location: 329590-330732 bp Feature: domain Description: PHA00653 Location: 329713-330730 bp Feature: domain Description: PHA00653 Location: 32971 3-330730 bp Feature: gene Location: 330773-331129 bp Feature: domain Description: Avd_like Location: 330803-331109 bp Feature: domain Description: Avd_like Location: 330803-331 1 09 bp Feature: gene Location: 331456-332517 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 331693-332314 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 331 693-33231 4 bp Feature: gene Location: 332542-332721 bp Feature: gene Location: 332718-333206 bp Feature: domain Description: Phage_holin_4_1 Location: 332757-333117 bp Feature: domain Description: Phage_holin_4_1 Location: 332757-3331 1 7 bp Feature: gene Location: 488091-488537 bp Feature: domain Description: Avd_like Location: 488178-488496 bp Feature: domain Description: Avd_like Location: 4881 78-488496 bp Feature: gene Location: 488607-488822 bp Feature: gene Location: 488979-490193 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 489189-489852 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4891 89-489852 bp Feature: gene Location: 490171-490620 bp Feature: gene Location: 490639-491022 bp Feature: domain Description: PRK13387 Location: 490645-490927 bp Feature: domain Description: PRK1 3387 Location: 490645-490927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), PRK13387 (1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional)

Seq: QWGK01000018.1 Clostridiaceae bacterium AF02-42 AF02-42.Scaf18, whole genome shotgun sequence (48403 bp)
Overview 1 RT 1: 19660-25183 bp Neighborhood of RT #1 [19660, 25188] COG1342 MTH1175 HTH_XRE RVT-GII HNHc COG1373 COG1373 Feature: gene Location: 19660-20439 bp Feature: domain Description: COG1342 Location: 19663-19942 bp Feature: domain Description: COG1342 Location: 19663-19942 bp Feature: domain Description: MTH1175 Location: 20041-20323 bp Feature: domain Description: MTH1175 Location: 2 0041-2 032 3 bp Feature: gene Location: 20827-21222 bp Feature: domain Description: HTH_XRE Location: 20959-21133 bp Feature: domain Description: HTH_XRE Location: 2 0959-2 1133 bp Feature: gene Location: 21465-23351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21798-22536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1798-2 2 536 bp Feature: domain Description: HNHc Note: nucleases Location: 23073-23235 bp Feature: domain Description: HNHc Note: nucleases Location: 2 3073-2 32 35 bp Feature: gene Location: 24340-24525 bp Feature: domain Description: COG1373 Location: 24343-24514 bp Feature: domain Description: COG1373 Location: 2 4343-2 4514 bp Feature: gene Location: 24535-25188 bp Feature: domain Description: COG1373 Location: 24538-25183 bp Feature: domain Description: COG1373 Location: 2 4538-2 5183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1342 (Predicted DNA-binding protein, UPF0251 family ), MTH1175, HTH_XRE (smart00530), RVT-GII, HNHc (smart00507), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: QWGK01000002.1 Clostridiaceae bacterium AF02-42 AF02-42.Scaf2, whole genome shotgun sequence (445407 bp)
Overview 1 RT 1: 358680-362392 bp Neighborhood of RT #1 [358680, 362392] Avd_like RVT-DGRs XhlA Feature: gene Location: 358680-359741 bp Feature: gene Location: 359811-360230 bp Feature: domain Description: Avd_like Location: 359892-360198 bp Feature: domain Description: Avd_like Location: 3 59892-3 60198 bp Feature: gene Location: 360585-361712 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 360831-361488 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 6083 1-3 61488 bp Feature: gene Location: 361768-362031 bp Feature: domain Description: XhlA Location: 361792-361996 bp Feature: domain Description: XhlA Location: 3 61792-3 61996 bp Feature: gene Location: 362069-362392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XhlA (pfam10779)

Seq: QWGK01000003.1 Clostridiaceae bacterium AF02-42 AF02-42.Scaf3, whole genome shotgun sequence (411145 bp)
Overview 1 RT 1: 148137-150731 bp Neighborhood of RT #1 [148137, 150736] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 148137-148352 bp Feature: domain Description: Phage_holin_Dp1 Location: 148146-148332 bp Feature: domain Description: Phage_holin_Dp1 Location: 14 814 6-14 8332 bp Feature: gene Location: 148339-148674 bp Feature: gene Location: 148700-149896 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 148895-149618 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14 8895-14 9618 bp Feature: gene Location: 150102-150509 bp Feature: gene Location: 150593-150736 bp Feature: domain Description: Phage_XkdX Location: 150614-150731 bp Feature: domain Description: Phage_XkdX Location: 150614 -150731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QWGK01000040.1 Clostridiaceae bacterium AF02-42 AF02-42.Scaf40, whole genome shotgun sequence (8758 bp)
Overview 1 RT 1: 406-4196 bp Neighborhood of RT #1 [406, 4196] RVT-GII Feature: gene Location: 406-1092 bp Feature: gene Location: 1028-1384 bp Feature: gene Location: 1451-2863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1823-2510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1823-25 10 bp Feature: gene Location: 3250-3789 bp Feature: gene Location: 3792-4196 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QWGK01000058.1 Clostridiaceae bacterium AF02-42 AF02-42.Scaf58, whole genome shotgun sequence (2589 bp)
Overview 1 RT 1: 1-2456 bp Neighborhood of RT #1 [1, 2485] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-231 bp Feature: gene Location: 653-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 917-1748 bp Feature: domain Description: Intron_maturas2 Location: 1820-2135 bp Feature: domain Description: Intron_maturas2 Location: 1820-2135 bp Feature: domain Description: HNHc Note: nucleases Location: 2303-2456 bp Feature: domain Description: HNHc Note: nucleases Location: 2303-2456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QWGK01000060.1 Clostridiaceae bacterium AF02-42 AF02-42.Scaf60, whole genome shotgun sequence (2506 bp)
Overview 1 RT 1: 106-2228 bp Neighborhood of RT #1 [106, 2228] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 106-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 370-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37 0-1189 bp Feature: domain Description: Intron_maturas2 Location: 1261-1564 bp Feature: domain Description: Intron_maturas2 Location: 1261-1564 bp Feature: domain Description: HNHc Note: nucleases Location: 1744-1888 bp Feature: domain Description: HNHc Note: nucleases Location: 17 44-1888 bp Feature: gene Location: 1962-2228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)