myRT

myRT report for GCA_003435375.1_ASM343537v1

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Seq: QWGL01000001.1 Clostridium sp. AM34-11AC AM34-11AC.Scaf1, whole genome shotgun sequence (675628 bp)
Overview 1 RT 1: 12-5425 bp Neighborhood of RT #1 [12, 5439] Maff2 VirD4 RVT-GII TraG_VirD4 DUF3801 Feature: gene Location: 12-143 bp Feature: domain Description: Maff2 Location: 15-141 bp Feature: domain Description: Maff2 Location: 1 5-1 41 bp Feature: gene Location: 364-1389 bp Feature: domain Description: VirD4 Location: 502-1288 bp Feature: domain Description: VirD4 Location: 502-1 288 bp Feature: gene Location: 1531-3441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1861-2605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 861 -2605 bp Feature: gene Location: 4067-4936 bp Feature: domain Description: TraG_VirD4 Location: 4496-4871 bp Feature: domain Description: TraG_VirD4 Location: 4496-4871 bp Feature: gene Location: 4933-5439 bp Feature: domain Description: DUF3801 Location: 5008-5425 bp Feature: domain Description: DUF3801 Location: 5008-5425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), RVT-GII, VirD4 (COG3505), DUF3801 (pfam12687)

Seq: QWGL01000022.1 Clostridium sp. AM34-11AC AM34-11AC.Scaf22, whole genome shotgun sequence (54368 bp)
Overview 1 RT 1: 6253-9036 bp Neighborhood of RT #1 [6253, 9036] Avd_like RVT-DGRs Feature: gene Location: 6253-6651 bp Feature: domain Description: Avd_like Location: 6295-6616 bp Feature: domain Description: Avd_like Location: 62 95-6616 bp Feature: gene Location: 6679-6858 bp Feature: gene Location: 7010-8182 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7244-7904 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 72 44-7904 bp Feature: gene Location: 8326-8799 bp Feature: gene Location: 8815-9036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: QWGL01000027.1 Clostridium sp. AM34-11AC AM34-11AC.Scaf27, whole genome shotgun sequence (43802 bp)
Overview 1 RT 1: 14-1444 bp Neighborhood of RT #1 [14, 1533] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 14-844 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41-641 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41-641 bp Feature: gene Location: 869-1048 bp Feature: gene Location: 1045-1533 bp Feature: domain Description: Phage_holin_4_1 Location: 1084-1444 bp Feature: domain Description: Phage_holin_4_1 Location: 1084-1444 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs

Seq: QWGL01000090.1 Clostridium sp. AM34-11AC AM34-11AC.Scaf90, whole genome shotgun sequence (1702 bp)
Overview 1 RT 1: 143-1190 bp Neighborhood of RT #1 [143, 1543] RVT-GII Feature: gene Location: 143-499 bp Feature: gene Location: 566-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569-1190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII