myRT

myRT report for GCA_003435455.1_ASM343545v1

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Seq: QWGM01000016.1 Clostridiaceae bacterium TF01-6 TF01-6.Scaf16, whole genome shotgun sequence (95499 bp)
Overview 1 RT 1: 27899-41529 bp Neighborhood of RT #1 [27899, 41930] YtxK COG4646 KOG0390 RVT_N RVT-GII YkfC YodL LPD16 DUF4316 LPD25 Feature: gene Location: 27899-28987 bp Feature: gene Location: 29056-35844 bp Feature: domain Description: YtxK Location: 31867-32722 bp Feature: domain Description: YtxK Location: 31 867-32722 bp Feature: domain Description: COG4646 Location: 32782-35347 bp Feature: domain Description: COG4646 Location: 32782-35347 bp Feature: domain Description: KOG0390 Location: 35698-35830 bp Feature: domain Description: KOG0390 Location: 35698-35830 bp Feature: gene Location: 36423-38093 bp Feature: RT Description: RVT_N Location: 36468-36711 bp Feature: RT Description: RVT_N Location: 36468-3671 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36756-37404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36756-37404 bp Feature: domain Description: YkfC Location: 37512-37707 bp Feature: domain Description: YkfC Location: 3751 2-37707 bp Feature: gene Location: 38094-39089 bp Feature: gene Location: 39132-41930 bp Feature: domain Description: YodL Location: 39951-40245 bp Feature: domain Description: YodL Location: 39951 -40245 bp Feature: domain Description: LPD16 Location: 40275-40497 bp Feature: domain Description: LPD1 6 Location: 40275-40497 bp Feature: domain Description: DUF4316 Location: 40545-40632 bp Feature: domain Description: DUF431 6 Location: 40545-40632 bp Feature: domain Description: LPD25 Location: 41238-41529 bp Feature: domain Description: LPD25 Location: 41 238-41 529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG0390 (KOG0390, DNA repair protein, SNF2 family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), YodL (pfam14191), LPD16 (pfam18830), DUF4316 (pfam14195), LPD25 (pfam18840)

Seq: QWGM01000002.1 Clostridiaceae bacterium TF01-6 TF01-6.Scaf2, whole genome shotgun sequence (255097 bp)
Overview 1 RT 1: 134038-138105 bp Neighborhood of RT #1 [134038, 138105] RVT-DGRs Feature: gene Location: 134038-134328 bp Feature: gene Location: 134444-134803 bp Feature: gene Location: 134769-136025 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 135060-135648 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 135060-135648 bp Feature: gene Location: 136156-136329 bp Feature: gene Location: 136411-138105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QWGM01000023.1 Clostridiaceae bacterium TF01-6 TF01-6.Scaf23, whole genome shotgun sequence (53279 bp)
Overview 1 RT 1: 17585-23583 bp Neighborhood of RT #1 [17585, 23699] DUF3791 COG1373 RVT-GII HNHc HTH_XRE COG1342 MTH1175 Feature: gene Location: 17585-17809 bp Feature: domain Description: DUF3791 Location: 17621-17786 bp Feature: domain Description: DUF3 791 Location: 17621-17786 bp Feature: gene Location: 18094-19020 bp Feature: domain Description: COG1373 Location: 18130-19009 bp Feature: domain Description: COG13 73 Location: 1813 0-19009 bp Feature: gene Location: 20008-21894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20341-21079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203 41-21079 bp Feature: domain Description: HNHc Note: nucleases Location: 21616-21778 bp Feature: domain Description: HNHc Note: nucleases Location: 21616-21778 bp Feature: gene Location: 22137-22532 bp Feature: domain Description: HTH_XRE Location: 22269-22443 bp Feature: domain Description: HTH_XRE Location: 22269-22443 bp Feature: gene Location: 22920-23699 bp Feature: domain Description: COG1342 Location: 22923-23202 bp Feature: domain Description: COG13 42 Location: 22923 -23 202 bp Feature: domain Description: MTH1175 Location: 23301-23583 bp Feature: domain Description: MTH1175 Location: 23 3 01-23 583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3791 (pfam12668), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), COG1342 (Predicted DNA-binding protein, UPF0251 family ), MTH1175

Seq: QWGM01000004.1 Clostridiaceae bacterium TF01-6 TF01-6.Scaf4, whole genome shotgun sequence (183411 bp)
Overview 1 RT 1: 46110-50416 bp Neighborhood of RT #1 [46110, 50502] RVT-DGRs DUF3751 Feature: gene Location: 46110-46463 bp Feature: gene Location: 46827-47090 bp Feature: gene Location: 47029-48252 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 47323-47944 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 7323-4 794 4 bp Feature: gene Location: 48674-49951 bp Feature: gene Location: 49951-50502 bp Feature: domain Description: DUF3751 Location: 49975-50416 bp Feature: domain Description: DUF3751 Location: 4 9975-504 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF3751 (pfam12571)

Seq: QWGM01000049.1 Clostridiaceae bacterium TF01-6 TF01-6.Scaf49, whole genome shotgun sequence (14491 bp)
Overview 1 RT 1: 233-3950 bp Neighborhood of RT #1 [233, 3979] RVT-GII InsQ Feature: gene Location: 233-397 bp Feature: gene Location: 495-1790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 750-1440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75 0-1440 bp Feature: gene Location: 1896-2198 bp Feature: gene Location: 2861-3979 bp Feature: domain Description: InsQ Location: 2864-3950 bp Feature: domain Description: InsQ Location: 2864-395 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII

Seq: QWGM01000050.1 Clostridiaceae bacterium TF01-6 TF01-6.Scaf50, whole genome shotgun sequence (12662 bp)
Overview 1 RT 1: 234-5004 bp Neighborhood of RT #1 [234, 5004] Maff2 VirD4 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 234-452 bp Feature: domain Description: Maff2 Location: 237-444 bp Feature: domain Description: Maff2 Location: 237-444 bp Feature: gene Location: 672-2012 bp Feature: domain Description: VirD4 Location: 828-1911 bp Feature: domain Description: VirD4 Location: 828-1911 bp Feature: gene Location: 2121-3938 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2385-3204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2385-3204 bp Feature: domain Description: Intron_maturas2 Location: 3276-3582 bp Feature: domain Description: Intron_maturas2 Location: 3276 -3582 bp Feature: domain Description: HNHc Note: nucleases Location: 3759-3903 bp Feature: domain Description: HNHc Note: nucleases Location: 3759-3903 bp Feature: gene Location: 3977-4243 bp Feature: gene Location: 4498-5004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Maff2 (pfam12750), VirD4 (COG3505)