myRT

myRT report for GCA_003436085.1_ASM343608v1

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Seq: QSOM01000001.1 Bacteroides xylanisolvens strain TM09-13 TM09-13.Scaf1, whole genome shotgun sequence (468787 bp)
Overview 1 RT 1: 332323-336531 bp Neighborhood of RT #1 [332323, 337037] HTH_3 TraG-D_C RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 332323-332526 bp Feature: domain Description: HTH_3 Location: 332347-332509 bp Feature: domain Description: HTH_3 Location: 332347-332509 bp Feature: gene Location: 332587-334053 bp Feature: domain Description: TraG-D_C Location: 333412-333745 bp Feature: domain Description: TraG-D_C Location: 33341 2-333745 bp Feature: gene Location: 334034-335731 bp Feature: RT Description: RVT_N Location: 334103-334346 bp Feature: RT Description: RVT_N Location: 3341 03-334346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334391-335039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334391 -335039 bp Feature: domain Description: GIIM Note: maturase Location: 335090-335324 bp Feature: domain Description: GIIM Note: maturase Location: 335090-335324 bp Feature: gene Location: 335816-335968 bp Feature: gene Location: 336348-337037 bp Feature: domain Description: YWFCY Location: 336354-336531 bp Feature: domain Description: YWFCY Location: 336354-336531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)

Seq: QSOM01000002.1 Bacteroides xylanisolvens strain TM09-13 TM09-13.Scaf2, whole genome shotgun sequence (437203 bp)
Overview 1 RT 1: 291169-303576 bp Neighborhood of RT #1 [291169, 303707] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 291169-292005 bp Feature: domain Description: PDDEXK_2 Location: 291190-291868 bp Feature: domain Description: PDDEXK_2 Location: 2 91190-2 91868 bp Feature: gene Location: 292174-294381 bp Feature: gene Location: 294589-295719 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 294910-295453 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 94910-2 95453 bp Feature: gene Location: 295770-301811 bp Feature: domain Description: DUF4011 Location: 297000-297513 bp Feature: domain Description: DUF4011 Location: 2 97000-2 97513 bp Feature: domain Description: DEXXQc_SF1 Location: 297852-298281 bp Feature: domain Description: DEXXQc_SF1 Location: 2 97852 -2 982 81 bp Feature: domain Description: DEXXQc_SF1 Location: 299280-300039 bp Feature: domain Description: DEXXQc_SF1 Location: 2 992 80-300039 bp Feature: domain Description: TIGR00376 Location: 300168-300558 bp Feature: domain Description: TIGR00376 Location: 300168-300558 bp Feature: domain Description: MTES_1575 Location: 300711-300996 bp Feature: domain Description: MTES_1575 Location: 300711-300996 bp Feature: domain Description: DUF3320 Location: 301326-301461 bp Feature: domain Description: DUF332 0 Location: 30132 6-301461 bp Feature: gene Location: 301908-303707 bp Feature: domain Description: rpsA Location: 301977-303576 bp Feature: domain Description: rpsA Location: 301977-303576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: QSOM01000032.1 Bacteroides xylanisolvens strain TM09-13 TM09-13.Scaf32, whole genome shotgun sequence (49371 bp)
Overview 1 RT 1: 28287-32264 bp Neighborhood of RT #1 [28287, 32264] couple_hipA HipA_C RVT-GII GIIM Feature: gene Location: 28287-28613 bp Feature: domain Description: couple_hipA Location: 28296-28590 bp Feature: domain Description: couple_hipA Location: 28296-28590 bp Feature: gene Location: 28616-29551 bp Feature: domain Description: HipA_C Location: 28781-29456 bp Feature: domain Description: HipA_C Location: 28781-29456 bp Feature: gene Location: 29884-31290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30226-30844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 0226-3 0844 bp Feature: domain Description: GIIM Note: maturase Location: 30901-31120 bp Feature: domain Description: GIIM Note: maturase Location: 3 0901-3 1120 bp Feature: gene Location: 31305-31466 bp Feature: gene Location: 31899-32264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT couple_hipA (TIGR03071), HipA_C (pfam07804), RVT-GII, GIIM (pfam08388)

Seq: QSOM01000036.1 Bacteroides xylanisolvens strain TM09-13 TM09-13.Scaf36, whole genome shotgun sequence (46262 bp)
Overview 1 RT 1: 13334-19428 bp Neighborhood of RT #1 [13334, 20081] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 13334-13912 bp Feature: domain Description: NGN_SP_UpxY Location: 13412-13694 bp Feature: domain Description: NGN_SP_UpxY Location: 134 12-13694 bp Feature: domain Description: KOW_NusG Location: 13745-13856 bp Feature: domain Description: KOW_NusG Location: 1374 5-13856 bp Feature: gene Location: 14298-15269 bp Feature: domain Description: Phage_int_SAM_5 Location: 14337-14580 bp Feature: domain Description: Phage_int_SAM_5 Location: 14 337-14 580 bp Feature: domain Description: INTN1_C_like Location: 14664-15183 bp Feature: domain Description: INTN1_C_like Location: 14 664 -15183 bp Feature: gene Location: 15540-17759 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15741-16326 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1574 1-16326 bp Feature: gene Location: 17737-18381 bp Feature: gene Location: 18378-20081 bp Feature: domain Description: REC Location: 19197-19428 bp Feature: domain Description: REC Location: 19197-194 28 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: QSOM01000042.1 Bacteroides xylanisolvens strain TM09-13 TM09-13.Scaf42, whole genome shotgun sequence (35559 bp)
Overview 1 RT 1: 326-6109 bp Neighborhood of RT #1 [326, 6222] KOG4768 RVT-GII Intron_maturas2 Trehalase GDB1 SGSH Feature: gene Location: 326-517 bp Feature: domain Description: KOG4768 Location: 383-515 bp Feature: domain Description: KOG4768 Location: 383-5 15 bp Feature: gene Location: 557-1105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 63-629 bp Feature: domain Description: Intron_maturas2 Location: 701-1010 bp Feature: domain Description: Intron_maturas2 Location: 701-1010 bp Feature: gene Location: 1500-4247 bp Feature: domain Description: Trehalase Location: 2766-3027 bp Feature: domain Description: Trehalase Location: 2766-3027 bp Feature: domain Description: GDB1 Location: 3111-3879 bp Feature: domain Description: GDB1 Location: 3111-3879 bp Feature: gene Location: 4636-6222 bp Feature: domain Description: SGSH Location: 4780-6109 bp Feature: domain Description: SGSH Location: 4780-6109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trehalase (pfam01204), GDB1 (COG3408), SGSH (cd16027), RVT-GII, Intron_maturas2 (pfam01348)