myRT

myRT report for GCA_003436175.1_ASM343617v1

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Seq: QSOY01000013.1 Bacteroides vulgatus strain TM06-6 TM06-6.Scaf13, whole genome shotgun sequence (122699 bp)
Overview 1 RT 1: 37428-40596 bp Neighborhood of RT #1 [37428, 40628] RVT-DGRs HTH_XRE Gp49 Feature: gene Location: 37428-37673 bp Feature: gene Location: 37657-38163 bp Feature: gene Location: 38231-39721 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38624-39221 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38624-39221 bp Feature: gene Location: 39968-40279 bp Feature: domain Description: HTH_XRE Location: 40082-40235 bp Feature: domain Description: HTH_XRE Location: 40082-40235 bp Feature: gene Location: 40284-40628 bp Feature: domain Description: Gp49 Location: 40338-40596 bp Feature: domain Description: Gp49 Location: 40338-40596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, HTH_XRE (smart00530), Gp49 (pfam05973)

Seq: QSOY01000019.1 Bacteroides vulgatus strain TM06-6 TM06-6.Scaf19, whole genome shotgun sequence (91539 bp)
Overview 1 RT 1: 63941-68002 bp Neighborhood of RT #1 [63941, 68061] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 Feature: gene Location: 63941-64939 bp Feature: domain Description: Bac_Flav_CT_J Location: 63965-64928 bp Feature: domain Description: Bac_Flav_CT_J Location: 63965-6492 8 bp Feature: gene Location: 64952-65488 bp Feature: gene Location: 65481-67316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65775-66597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65775-66597 bp Feature: domain Description: Intron_maturas2 Location: 66756-67125 bp Feature: domain Description: Intron_maturas2 Location: 66756-6712 5 bp Feature: domain Description: HNHc Note: nucleases Location: 67149-67290 bp Feature: domain Description: HNHc Note: nucleases Location: 67149-672 90 bp Feature: gene Location: 67636-67797 bp Feature: gene Location: 67837-68061 bp Feature: domain Description: DUF4141 Location: 67849-68002 bp Feature: domain Description: DUF4141 Location: 67849-68002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: QSOY01000026.1 Bacteroides vulgatus strain TM06-6 TM06-6.Scaf26, whole genome shotgun sequence (83159 bp)
Overview 1 RT 1: 73311-76519 bp Neighborhood of RT #1 [73311, 76519] RVT-UG27 Feature: gene Location: 73311-73589 bp Feature: gene Location: 73619-73885 bp Feature: gene Location: 73935-75197 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 74127-74763 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 74127-74763 bp Feature: gene Location: 75190-75858 bp Feature: gene Location: 75872-76519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSOY01000003.1 Bacteroides vulgatus strain TM06-6 TM06-6.Scaf3, whole genome shotgun sequence (194311 bp)
Overview 1 RT 1: 46745-53630 bp Neighborhood of RT #1 [46745, 53630] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 46745-48292 bp Feature: domain Description: AAA_25 Location: 47360-47822 bp Feature: domain Description: AAA_25 Location: 4 7360-4 7822 bp Feature: gene Location: 48504-48686 bp Feature: gene Location: 49235-51043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49499-50321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 94 99-50321 bp Feature: domain Description: Intron_maturas2 Location: 50390-50699 bp Feature: domain Description: Intron_maturas2 Location: 50390-50699 bp Feature: gene Location: 51015-51944 bp Feature: domain Description: Toprim_2 Location: 51567-51855 bp Feature: domain Description: Toprim_2 Location: 51567-51855 bp Feature: gene Location: 52227-53630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QSOY01000082.1 Bacteroides vulgatus strain TM06-6 TM06-6.Scaf82, whole genome shotgun sequence (2420 bp)
Overview 1 RT 1: 122-2225 bp Neighborhood of RT #1 [122, 2225] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: gene Location: 2091-2225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSOY01000009.1 Bacteroides vulgatus strain TM06-6 TM06-6.Scaf9, whole genome shotgun sequence (138972 bp)
Overview 1 RT 1: 112693-118780 bp Neighborhood of RT #1 [112693, 119328] HATPase_c_3 TraG-D_C RVT-GII Intron_maturas2 HNHc YWFCY Feature: gene Location: 112693-114687 bp Feature: domain Description: HATPase_c_3 Location: 112753-113122 bp Feature: domain Description: HATPase_c_3 Location: 112753-113122 bp Feature: gene Location: 114801-116228 bp Feature: domain Description: TraG-D_C Location: 115605-115935 bp Feature: domain Description: TraG-D_C Location: 1156 05-115935 bp Feature: gene Location: 116215-118047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116500-117319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116 500-117319 bp Feature: domain Description: Intron_maturas2 Location: 117394-117703 bp Feature: domain Description: Intron_maturas2 Location: 117394-117703 bp Feature: domain Description: HNHc Note: nucleases Location: 117877-118021 bp Feature: domain Description: HNHc Note: nucleases Location: 117877-118021 bp Feature: gene Location: 118084-118473 bp Feature: gene Location: 118594-119328 bp Feature: domain Description: YWFCY Location: 118603-118780 bp Feature: domain Description: YWFCY Location: 1186 03-118780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), YWFCY (pfam14293)