myRT

myRT report for GCA_003436255.1_ASM343625v1

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Seq: QSOO01000001.1 Bacteroides sp. D20 strain TM09-11 TM09-11.Scaf1, whole genome shotgun sequence (451875 bp)
Overview 1 RT 1: 78591-82657 bp 2 RT 2: 88928-94880 bp Neighborhood of RT #1 [78591, 82657] TraG-D_C RVT_N RVT-GII GIIM Neighborhood of RT #2 [88928, 94880] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 78591-79127 bp Feature: gene Location: 79299-80534 bp Feature: domain Description: TraG-D_C Location: 79881-80214 bp Feature: domain Description: TraG-D_C Location: 79881 -8021 4 bp Feature: gene Location: 80539-82191 bp Feature: domain Description: RVT_N Location: 80593-80836 bp Feature: domain Description: RVT_N Location: 80593-80836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80881-81529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80881 -81 529 bp Feature: domain Description: GIIM Note: maturase Location: 81583-81814 bp Feature: domain Description: GIIM Note: maturase Location: 81 583-81 81 4 bp Feature: gene Location: 82273-82446 bp Feature: gene Location: 82508-82657 bp Feature: gene Location: 88928-89251 bp Feature: domain Description: DUF4133 Location: 88943-89213 bp Feature: domain Description: DUF41 33 Location: 88943-8921 3 bp Feature: gene Location: 89248-91344 bp Feature: domain Description: Bac_Flav_CT_G Location: 89251-91330 bp Feature: domain Description: Bac_Flav_CT_G Location: 89251 -91 330 bp Feature: gene Location: 91892-93706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92156-92978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 921 56-92978 bp Feature: domain Description: Intron_maturas2 Location: 93053-93371 bp Feature: domain Description: Intron_maturas2 Location: 93053-93371 bp Feature: domain Description: HNHc Note: nucleases Location: 93527-93677 bp Feature: domain Description: HNHc Note: nucleases Location: 93527-93677 bp Feature: gene Location: 93784-94260 bp Feature: domain Description: Bac_Flav_CT_G Location: 93811-94225 bp Feature: domain Description: Bac_Flav_CT_G Location: 9381 1 -94225 bp Feature: gene Location: 94266-94880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSOO01000015.1 Bacteroides sp. D20 strain TM09-11 TM09-11.Scaf15, whole genome shotgun sequence (124668 bp)
Overview 1 RT 1: 36986-40219 bp Neighborhood of RT #1 [36986, 40219] RVT-UG27 Feature: gene Location: 36986-37264 bp Feature: gene Location: 37294-37560 bp Feature: gene Location: 37610-38875 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 37799-38435 bp Feature: RT Description: RVT-UG2 7 Note: UG2 7 RT Location: 37799-38435 bp Feature: gene Location: 38893-39519 bp Feature: gene Location: 39563-40219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSOO01000026.1 Bacteroides sp. D20 strain TM09-11 TM09-11.Scaf26, whole genome shotgun sequence (42831 bp)
Overview 1 RT 1: 1881-15386 bp Neighborhood of RT #1 [1881, 15386] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 1881-2123 bp Feature: gene Location: 2303-2788 bp Feature: gene Location: 2785-4089 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2998-3592 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2998-3 592 bp Feature: gene Location: 4606-11343 bp Feature: domain Description: Laminin_G_3 Location: 6067-6145 bp Feature: domain Description: Laminin_G_3 Location: 6067-6145 bp Feature: domain Description: Laminin_G_3 Location: 6796-7222 bp Feature: domain Description: Laminin_G_3 Location: 6796-7222 bp Feature: gene Location: 11370-15386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QSOO01000028.1 Bacteroides sp. D20 strain TM09-11 TM09-11.Scaf28, whole genome shotgun sequence (36935 bp)
Overview 1 RT 1: 4978-7834 bp Neighborhood of RT #1 [4978, 7902] RVT-Retrons COG3943 Feature: gene Location: 4978-5112 bp Feature: gene Location: 5261-5476 bp Feature: gene Location: 5502-6359 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5664-6189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5664 -6189 bp Feature: gene Location: 6390-7271 bp Feature: gene Location: 7537-7902 bp Feature: domain Description: COG3943 Location: 7576-7834 bp Feature: domain Description: COG394 3 Location: 7576-7834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: QSOO01000039.1 Bacteroides sp. D20 strain TM09-11 TM09-11.Scaf39, whole genome shotgun sequence (4057 bp)
Overview 1 RT 1: 73-4054 bp Neighborhood of RT #1 [73, 4054] RVT_N RVT-GII GIIM Feature: gene Location: 73-951 bp Feature: gene Location: 800-1210 bp Feature: gene Location: 1587-3254 bp Feature: domain Description: RVT_N Location: 1641-1884 bp Feature: domain Description: RVT_N Location: 1641-1884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1929-2577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1929-25 77 bp Feature: domain Description: GIIM Note: maturase Location: 2631-2862 bp Feature: domain Description: GIIM Note: maturase Location: 2631-2862 bp Feature: gene Location: 3236-3550 bp Feature: gene Location: 3911-4054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)