myRT

myRT report for GCA_003436285.1_ASM343628v1

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Seq: QSOR01000001.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf1, whole genome shotgun sequence (666198 bp)
Overview 1 RT 1: 564605-568483 bp Neighborhood of RT #1 [564605, 568536] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 564605-565015 bp Feature: domain Description: Cas_Cmr5 Location: 564653-564899 bp Feature: domain Description: Cas_Cmr5 Location: 564653-564899 bp Feature: gene Location: 565012-565962 bp Feature: domain Description: Cmr6_III-B Location: 565174-565951 bp Feature: domain Description: Cmr6_III-B Location: 5651 74-565951 bp Feature: gene Location: 565982-568252 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 566189-566795 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5661 89-566795 bp Feature: domain Description: Cas1_I-II-III Location: 567254-568211 bp Feature: domain Description: Cas1 _I-II-III Location: 567254-56821 1 bp Feature: gene Location: 568246-568536 bp Feature: domain Description: Cas2_I_II_III Location: 568273-568483 bp Feature: domain Description: Cas2_I_II_III Location: 568273-568483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: QSOR01000010.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf10, whole genome shotgun sequence (207023 bp)
Overview 1 RT 1: 129356-131372 bp Neighborhood of RT #1 [129356, 131372] RVT-GII HTH_28 Feature: gene Location: 129356-129718 bp Feature: gene Location: 129722-129931 bp Feature: gene Location: 129961-130158 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129964-130156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9964-130156 bp Feature: gene Location: 130279-130569 bp Feature: domain Description: HTH_28 Location: 130303-130450 bp Feature: domain Description: HTH_2 8 Location: 130303-130450 bp Feature: gene Location: 130998-131372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)

Seq: QSOR01000013.1 Bacteroides fragilis strain TM08-15 TM08-15.Scaf13, whole genome shotgun sequence (186515 bp)
Overview 1 RT 1: 102681-111638 bp Neighborhood of RT #1 [102681, 111646] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 102681-104870 bp Feature: domain Description: GlnA3 Location: 102756-104868 bp Feature: domain Description: GlnA3 Location: 102756-104868 bp Feature: gene Location: 105110-107329 bp Feature: gene Location: 107536-108648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107851-108400 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 107851-108400 bp Feature: gene Location: 108789-110582 bp Feature: domain Description: rpsA Location: 108867-110475 bp Feature: domain Description: rpsA Location: 108867-110475 bp Feature: gene Location: 110732-111646 bp Feature: domain Description: RNase_Z Location: 110747-111638 bp Feature: domain Description: RNase_Z Location: 110747-11163 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)