myRT

myRT report for GCA_003436425.1_ASM343642v1

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Seq: QSPK01000003.1 Eubacterium sp. TM05-53 TM05-53.Scaf3, whole genome shotgun sequence (84478 bp)
Overview 1 RT 1: 9573-12977 bp Neighborhood of RT #1 [9573, 12977] Amidase_2 CW_7 CW_7 CW_7 RVT-DGRs Feature: gene Location: 9573-10559 bp Feature: domain Description: Amidase_2 Location: 9645-10002 bp Feature: domain Description: Amidase_2 Location: 9645-1 0002 bp Feature: domain Description: CW_7 Location: 10131-10245 bp Feature: domain Description: CW_7 Location: 1 01 31 -1 0245 bp Feature: domain Description: CW_7 Location: 10293-10407 bp Feature: domain Description: CW_7 Location: 1 0293-1 0407 bp Feature: domain Description: CW_7 Location: 10437-10551 bp Feature: domain Description: CW_7 Location: 1 0437-1 0551 bp Feature: gene Location: 10644-11018 bp Feature: gene Location: 11108-12262 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 11318-12017 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 1 31 8-1 201 7 bp Feature: gene Location: 12451-12699 bp Feature: gene Location: 12828-12977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Amidase_2 (pfam01510), CW_7 (pfam08230)

Seq: QSPK01000040.1 Eubacterium sp. TM05-53 TM05-53.Scaf40, whole genome shotgun sequence (21333 bp)
Overview 1 RT 1: 14023-19917 bp Neighborhood of RT #1 [14023, 19946] PRK02304 recJ RVT-GII HNHc ruvB Feature: gene Location: 14023-14544 bp Feature: domain Description: PRK02304 Location: 14026-14536 bp Feature: domain Description: PRK02 304 Location: 1402 6-14536 bp Feature: gene Location: 14576-15967 bp Feature: domain Description: recJ Location: 14615-15956 bp Feature: domain Description: recJ Location: 14615-15956 bp Feature: gene Location: 16041-17924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16353-17091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16353-17091 bp Feature: domain Description: HNHc Note: nucleases Location: 17691-17793 bp Feature: domain Description: HNHc Note: nucleases Location: 17691-17793 bp Feature: gene Location: 18683-18895 bp Feature: gene Location: 18936-19946 bp Feature: domain Description: ruvB Location: 18972-19917 bp Feature: domain Description: ruvB Location: 18972 -19917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02304 (adenine phosphoribosyltransferase; Provisional), recJ (TIGR00644), RVT-GII, HNHc (smart00507), ruvB (TIGR00635)

Seq: QSPK01000007.1 Eubacterium sp. TM05-53 TM05-53.Scaf7, whole genome shotgun sequence (59997 bp)
Overview 1 RT 1: 31427-37205 bp Neighborhood of RT #1 [31427, 37261] Uup Uup RVT-GII GIIM MobA_MobL HTH_17 Feature: gene Location: 31427-32890 bp Feature: domain Description: Uup Location: 31439-31658 bp Feature: domain Description: Uup Location: 3 143 9-3 1658 bp Feature: domain Description: Uup Location: 31688-32870 bp Feature: domain Description: Uup Location: 3 1688-3 2870 bp Feature: gene Location: 33657-33821 bp Feature: gene Location: 33956-35254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34157-34775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4157-3 4775 bp Feature: domain Description: GIIM Note: maturase Location: 34829-35048 bp Feature: domain Description: GIIM Note: maturase Location: 3 4829-3 5048 bp Feature: gene Location: 35359-36789 bp Feature: domain Description: MobA_MobL Location: 35554-36004 bp Feature: domain Description: MobA_MobL Location: 3 5554-3 6004 bp Feature: gene Location: 37046-37261 bp Feature: domain Description: HTH_17 Location: 37070-37205 bp Feature: domain Description: HTH_17 Location: 3 7070-3 7205 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), RVT-GII, GIIM (pfam08388), MobA_MobL (pfam03389), HTH_17 (pfam12728)