myRT

myRT report for GCA_003436725.1_ASM343672v1

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Seq: QSQN01000011.1 Ruminococcus lactaris strain TF11-7 TF11-7.Scaf11, whole genome shotgun sequence (84164 bp)
Overview 1 RT 1: 63973-68949 bp Neighborhood of RT #1 [63973, 69035] ABC_SMC_barmotin RVT-DGRs ABC_trans_CmpB Feature: gene Location: 63973-66291 bp Feature: domain Description: ABC_SMC_barmotin Location: 64069-64708 bp Feature: domain Description: ABC_SMC_barmotin Location: 64069-64708 bp Feature: gene Location: 66495-66647 bp Feature: gene Location: 66680-67909 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66965-67577 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66965-67577 bp Feature: gene Location: 67903-68601 bp Feature: gene Location: 68601-69035 bp Feature: domain Description: ABC_trans_CmpB Location: 68694-68949 bp Feature: domain Description: ABC_trans_CmpB Location: 68694-68949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_SMC_barmotin (cd03278), RVT-DGRs, ABC_trans_CmpB (pfam06541)

Seq: QSQN01000014.1 Ruminococcus lactaris strain TF11-7 TF11-7.Scaf14, whole genome shotgun sequence (70823 bp)
Overview 1 RT 1: 39682-46150 bp Neighborhood of RT #1 [39682, 46150] DUF3801 T4SS-DNA_transf RVT-GII VirD4 Feature: gene Location: 39682-40845 bp Feature: domain Description: DUF3801 Location: 39781-40801 bp Feature: domain Description: DUF3801 Location: 39781-40801 bp Feature: gene Location: 40888-41427 bp Feature: domain Description: T4SS-DNA_transf Location: 41128-41365 bp Feature: domain Description: T4SS-DNA_transf Location: 4112 8-41365 bp Feature: gene Location: 42181-43986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42439-43156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 439-43156 bp Feature: gene Location: 44120-45700 bp Feature: domain Description: VirD4 Location: 44129-45239 bp Feature: domain Description: VirD4 Location: 4412 9-452 39 bp Feature: gene Location: 45812-46150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), T4SS-DNA_transf (pfam02534), RVT-GII, VirD4 (COG3505)

Seq: QSQN01000041.1 Ruminococcus lactaris strain TF11-7 TF11-7.Scaf41, whole genome shotgun sequence (24917 bp)
Overview 1 RT 1: 22136-24853 bp Neighborhood of RT #1 [22136, 24879] RVT-CRISPR cas1_HMARI Cas2_I_II_III Feature: gene Location: 22136-22279 bp Feature: gene Location: 22373-22507 bp Feature: gene Location: 22702-24609 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22915-23491 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 22915-23 491 bp Feature: domain Description: cas1_HMARI Location: 23626-24601 bp Feature: domain Description: cas1_HMARI Location: 23 626-24601 bp Feature: gene Location: 24619-24879 bp Feature: domain Description: Cas2_I_II_III Location: 24628-24853 bp Feature: domain Description: Cas2_I_II_III Location: 24628-24853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, cas1_HMARI (TIGR03641), Cas2_I_II_III (cl11442)