myRT

myRT report for GCA_003436875.1_ASM343687v1

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Seq: QSQY01000001.1 Parabacteroides sp. 20_3 strain TF09-4 TF09-4.Scaf1, whole genome shotgun sequence (663068 bp)
Overview 1 RT 1: 658766-662363 bp Neighborhood of RT #1 [658766, 662363] RVT-GII Intron_maturas2 HTH_17 Feature: gene Location: 658766-658906 bp Feature: gene Location: 658976-659125 bp Feature: gene Location: 659163-661133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 659592-660417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 659592-66041 7 bp Feature: domain Description: Intron_maturas2 Location: 660531-660810 bp Feature: domain Description: Intron_maturas2 Location: 660531 -66081 0 bp Feature: gene Location: 661485-661778 bp Feature: domain Description: HTH_17 Location: 661611-661731 bp Feature: domain Description: HTH_1 7 Location: 661 61 1 -661 731 bp Feature: gene Location: 661941-662363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HTH_17 (pfam12728)

Seq: QSQY01000003.1 Parabacteroides sp. 20_3 strain TF09-4 TF09-4.Scaf3, whole genome shotgun sequence (292060 bp)
Overview 1 RT 1: 209498-214042 bp Neighborhood of RT #1 [209498, 214042] RVT-Retrons Feature: gene Location: 209498-209626 bp Feature: gene Location: 209645-209881 bp Feature: gene Location: 210577-211674 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 210796-211417 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 10796-2 11417 bp Feature: gene Location: 211839-213125 bp Feature: gene Location: 213218-214042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QSQY01000032.1 Parabacteroides sp. 20_3 strain TF09-4 TF09-4.Scaf32, whole genome shotgun sequence (32247 bp)
Overview 1 RT 1: 21424-26690 bp Neighborhood of RT #1 [21424, 26713] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 21424-23454 bp Feature: domain Description: Bac_Flav_CT_G Location: 21427-23449 bp Feature: domain Description: Bac_Flav_CT_G Location: 21427-23 449 bp Feature: gene Location: 23648-23854 bp Feature: gene Location: 24080-25723 bp Feature: RT Description: RVT_N Location: 24134-24377 bp Feature: RT Description: RVT_N Location: 2413 4-243 77 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24422-25067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24422-25067 bp Feature: domain Description: GIIM Note: maturase Location: 25118-25352 bp Feature: domain Description: GIIM Note: maturase Location: 25118-253 52 bp Feature: gene Location: 25735-26328 bp Feature: domain Description: Bac_Flav_CT_G Location: 25852-26311 bp Feature: domain Description: Bac_Flav_CT_G Location: 25852-263 11 bp Feature: gene Location: 26357-26713 bp Feature: domain Description: DUF3876 Location: 26420-26690 bp Feature: domain Description: DUF3 876 Location: 26420-26690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)