myRT

myRT report for GCA_003436945.1_ASM343694v1

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Seq: QSRA01000031.1 Dorea formicigenerans strain TF09-3 TF09-3.Scaf31, whole genome shotgun sequence (35192 bp)
Overview 1 RT 1: 331-5361 bp Neighborhood of RT #1 [331, 5366] RVT-GII GIIM PDDEXK_2 PRK11413 Feature: gene Location: 331-474 bp Feature: gene Location: 461-1744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 -1 286 bp Feature: domain Description: GIIM Note: maturase Location: 1346-1568 bp Feature: domain Description: GIIM Note: maturase Location: 1 346-1 568 bp Feature: gene Location: 2001-2978 bp Feature: domain Description: PDDEXK_2 Location: 2217-2727 bp Feature: domain Description: PDDEXK_2 Location: 221 7-2727 bp Feature: gene Location: 3087-5366 bp Feature: domain Description: PRK11413 Location: 3090-5361 bp Feature: domain Description: PRK1 1 41 3 Location: 3090-5361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PDDEXK_2 (pfam12784), PRK11413 (putative hydratase; Provisional)

Seq: QSRA01000032.1 Dorea formicigenerans strain TF09-3 TF09-3.Scaf32, whole genome shotgun sequence (33061 bp)
Overview 1 RT 1: 18644-25579 bp Neighborhood of RT #1 [18644, 25617] ABC_sbcCD ABC_sbcCD SbcD RVT-GII GIIM Phage_int_SAM_1 INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 18644-21400 bp Feature: domain Description: ABC_sbcCD Location: 18647-19433 bp Feature: domain Description: ABC_sbcCD Location: 18647-19433 bp Feature: domain Description: ABC_sbcCD Location: 20084-21386 bp Feature: domain Description: ABC_sbcCD Location: 2 0084-2 1386 bp Feature: gene Location: 21397-22533 bp Feature: domain Description: SbcD Location: 21400-22342 bp Feature: domain Description: SbcD Location: 2 1400-2 2 342 bp Feature: gene Location: 22743-23429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22746-22977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 746-2 2 977 bp Feature: domain Description: GIIM Note: maturase Location: 23034-23250 bp Feature: domain Description: GIIM Note: maturase Location: 2 3034-2 32 50 bp Feature: gene Location: 23478-24827 bp Feature: domain Description: Phage_int_SAM_1 Location: 23970-24174 bp Feature: domain Description: Phage_int_SAM_1 Location: 2 3970-2 4174 bp Feature: domain Description: INT_RitA_C_like Location: 24261-24801 bp Feature: domain Description: INT_RitA_C_like Location: 2 42 61-2 4801 bp Feature: gene Location: 24820-25617 bp Feature: domain Description: INT_RitB_C_like Location: 25156-25579 bp Feature: domain Description: INT_RitB_C_like Location: 2 5156-2 5579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_sbcCD (cd03279), SbcD (COG0420), RVT-GII, GIIM (pfam08388), Phage_int_SAM_1 (pfam02899), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: QSRA01000033.1 Dorea formicigenerans strain TF09-3 TF09-3.Scaf33, whole genome shotgun sequence (32924 bp)
Overview 1 RT 1: 3-9260 bp Neighborhood of RT #1 [3, 9562] YtxK COG4646 COG4646 KOG1000 RVT-GII Intron_maturas2 T_den_put_tspse Feature: gene Location: 3-5366 bp Feature: domain Description: YtxK Location: 1698-2094 bp Feature: domain Description: YtxK Location: 1698-2094 bp Feature: domain Description: COG4646 Location: 2169-2343 bp Feature: domain Description: COG4646 Location: 2169-23 43 bp Feature: domain Description: COG4646 Location: 2631-4728 bp Feature: domain Description: COG4646 Location: 263 1-4728 bp Feature: domain Description: KOG1000 Location: 5085-5301 bp Feature: domain Description: KOG1000 Location: 5085-53 01 bp Feature: gene Location: 5917-7809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6238-7078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623 8-7078 bp Feature: domain Description: Intron_maturas2 Location: 7156-7462 bp Feature: domain Description: Intron_maturas2 Location: 7156-7462 bp Feature: gene Location: 7819-8592 bp Feature: gene Location: 8750-9562 bp Feature: domain Description: T_den_put_tspse Location: 8840-9260 bp Feature: domain Description: T_den_put_tspse Location: 8840-9260 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), T_den_put_tspse (TIGR01784)

Seq: QSRA01000005.1 Dorea formicigenerans strain TF09-3 TF09-3.Scaf5, whole genome shotgun sequence (153610 bp)
Overview 1 RT 1: 44695-48193 bp Neighborhood of RT #1 [44695, 48193] OmpR HTH_16 RVT-GII GIIM HTH_26 Feature: gene Location: 44695-45123 bp Feature: domain Description: OmpR Location: 44785-45109 bp Feature: domain Description: OmpR Location: 4 4 785-4 5109 bp Feature: gene Location: 45169-45396 bp Feature: domain Description: HTH_16 Location: 45199-45388 bp Feature: domain Description: HTH_16 Location: 4 5199-4 5388 bp Feature: gene Location: 45998-47320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46265-46955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6265-4 6955 bp Feature: domain Description: GIIM Note: maturase Location: 47030-47234 bp Feature: domain Description: GIIM Note: maturase Location: 4 7030-4 7234 bp Feature: gene Location: 47548-47808 bp Feature: domain Description: HTH_26 Location: 47605-47788 bp Feature: domain Description: HTH_26 Location: 4 7605-4 7788 bp Feature: gene Location: 47849-48193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), HTH_16 (pfam12645), RVT-GII, GIIM (pfam08388), HTH_26 (pfam13443)