myRT

myRT report for GCA_003437005.1_ASM343700v1

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Seq: QSRK01000022.1 Bacteroides uniformis strain TF08-13 TF08-13.Scaf22, whole genome shotgun sequence (85607 bp)
Overview 1 RT 1: 29635-34912 bp Neighborhood of RT #1 [29635, 35208] HTH_17 RVT-GII Intron_maturas2 HNHc RDD Feature: gene Location: 29635-29940 bp Feature: domain Description: HTH_17 Location: 29773-29920 bp Feature: domain Description: HTH_1 7 Location: 29773-29920 bp Feature: gene Location: 30020-30382 bp Feature: gene Location: 30596-32404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30860-31682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30860-31 682 bp Feature: domain Description: Intron_maturas2 Location: 31808-32063 bp Feature: domain Description: Intron_maturas2 Location: 31 808-32063 bp Feature: domain Description: HNHc Note: nucleases Location: 32237-32378 bp Feature: domain Description: HNHc Note: nucleases Location: 32237-32378 bp Feature: gene Location: 32937-34109 bp Feature: gene Location: 34483-35208 bp Feature: domain Description: RDD Location: 34537-34912 bp Feature: domain Description: RDD Location: 34537-3491 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RDD (pfam06271)

Seq: QSRK01000004.1 Bacteroides uniformis strain TF08-13 TF08-13.Scaf4, whole genome shotgun sequence (240251 bp)
Overview 1 RT 1: 27-9898 bp Neighborhood of RT #1 [27, 10071] DEXXQc_Upf1-like DEXXQc_Upf1-like RVT-AbiP2 DUF4372 DDE_Tnp_1 Feature: gene Location: 27-1523 bp Feature: domain Description: DEXXQc_Upf1-like Location: 630-819 bp Feature: domain Description: DEXXQc_Upf1-like Location: 630-819 bp Feature: domain Description: DEXXQc_Upf1-like Location: 936-1086 bp Feature: domain Description: DEXXQc_Upf1-like Location: 936-1086 bp Feature: gene Location: 1526-6394 bp Feature: gene Location: 6413-8080 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6848-7331 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 6848-7331 bp Feature: gene Location: 8153-8620 bp Feature: gene Location: 8908-10071 bp Feature: domain Description: DUF4372 Location: 8920-9133 bp Feature: domain Description: DUF4372 Location: 892 0-9133 bp Feature: domain Description: DDE_Tnp_1 Location: 9271-9898 bp Feature: domain Description: DDE_Tnp_1 Location: 92 71-9898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXXQc_Upf1-like (cd17934), RVT-AbiP2, DUF4372 (pfam14294), DDE_Tnp_1 (pfam01609)

Seq: QSRK01000057.1 Bacteroides uniformis strain TF08-13 TF08-13.Scaf57, whole genome shotgun sequence (2496 bp)
Overview 1 RT 1: 118-2299 bp Neighborhood of RT #1 [118, 2299] RVT-GII Intron_maturas2 Feature: gene Location: 118-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 82-1204 bp Feature: domain Description: Intron_maturas2 Location: 1273-1582 bp Feature: domain Description: Intron_maturas2 Location: 1273 -1582 bp Feature: gene Location: 1964-2299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSRK01000006.1 Bacteroides uniformis strain TF08-13 TF08-13.Scaf6, whole genome shotgun sequence (210574 bp)
Overview 1 RT 1: 29778-36183 bp Neighborhood of RT #1 [29778, 36183] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 29778-30845 bp Feature: domain Description: AAA_25 Location: 29913-30375 bp Feature: domain Description: AAA_25 Location: 29913-30375 bp Feature: gene Location: 31057-31239 bp Feature: gene Location: 31788-33596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32052-32874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32052-32874 bp Feature: domain Description: Intron_maturas2 Location: 32943-33252 bp Feature: domain Description: Intron_maturas2 Location: 3294 3-33252 bp Feature: gene Location: 33586-34497 bp Feature: domain Description: Toprim_2 Location: 34120-34408 bp Feature: domain Description: Toprim_2 Location: 34 120-34 4 08 bp Feature: gene Location: 34780-36183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)