myRT

myRT report for GCA_003437205.1_ASM343720v1

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Seq: QSRU01000012.1 Bacteroides uniformis strain TF07-2 TF07-2.Scaf12, whole genome shotgun sequence (176286 bp)
Overview 1 RT 1: 161291-165804 bp Neighborhood of RT #1 [161291, 165842] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc DUF4141 DUF3876 Feature: gene Location: 161291-162295 bp Feature: domain Description: Bac_Flav_CT_J Location: 161297-162266 bp Feature: domain Description: Bac_Flav_CT_J Location: 1 61 297-1 62266 bp Feature: gene Location: 162299-162889 bp Feature: gene Location: 162876-164684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163140-163962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 631 40-1 63962 bp Feature: domain Description: Intron_maturas2 Location: 164058-164397 bp Feature: domain Description: Intron_maturas2 Location: 1 64058-1 64397 bp Feature: domain Description: HNHc Note: nucleases Location: 164505-164658 bp Feature: domain Description: HNHc Note: nucleases Location: 1 64505-1 64658 bp Feature: gene Location: 165243-165449 bp Feature: domain Description: DUF4141 Location: 165282-165435 bp Feature: domain Description: DUF41 41 Location: 1 65282-1 65435 bp Feature: gene Location: 165453-165842 bp Feature: domain Description: DUF3876 Location: 165540-165804 bp Feature: domain Description: DUF3876 Location: 1 65540-1 65804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), DUF3876 (pfam12992)

Seq: QSRU01000016.1 Bacteroides uniformis strain TF07-2 TF07-2.Scaf16, whole genome shotgun sequence (88502 bp)
Overview 1 RT 1: 6662-13148 bp Neighborhood of RT #1 [6662, 13148] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 6662-7924 bp Feature: domain Description: Relaxase Location: 6842-7316 bp Feature: domain Description: Relaxase Location: 6842 -7316 bp Feature: domain Description: Relaxase Location: 7472-7682 bp Feature: domain Description: Relaxase Location: 7472 -7682 bp Feature: gene Location: 7987-8910 bp Feature: domain Description: YWFCY Location: 7993-8170 bp Feature: domain Description: YWFCY Location: 7993-8170 bp Feature: gene Location: 9547-11199 bp Feature: RT Description: RVT_N Location: 9601-9844 bp Feature: RT Description: RVT_N Location: 9601-9844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9889-10537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9889-10537 bp Feature: domain Description: GIIM Note: maturase Location: 10591-10822 bp Feature: domain Description: GIIM Note: maturase Location: 10591-1082 2 bp Feature: gene Location: 11204-12439 bp Feature: domain Description: TraG-D_C Location: 11786-12119 bp Feature: domain Description: TraG-D_C Location: 11786-12 119 bp Feature: gene Location: 12534-13148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSRU01000002.1 Bacteroides uniformis strain TF07-2 TF07-2.Scaf2, whole genome shotgun sequence (385293 bp)
Overview 1 RT 1: 259104-261960 bp Neighborhood of RT #1 [259104, 262028] RVT-Retrons COG3943 Feature: gene Location: 259104-259238 bp Feature: gene Location: 259387-259602 bp Feature: gene Location: 259628-260485 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 259790-260315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 259790-2603 15 bp Feature: gene Location: 260516-261397 bp Feature: gene Location: 261663-262028 bp Feature: domain Description: COG3943 Location: 261702-261960 bp Feature: domain Description: COG3 943 Location: 261702-261960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein )

Seq: QSRU01000026.1 Bacteroides uniformis strain TF07-2 TF07-2.Scaf26, whole genome shotgun sequence (38711 bp)
Overview 1 RT 1: 6006-10348 bp Neighborhood of RT #1 [6006, 10413] TraO zf-CHC2 RVT-GII Intron_maturas2 Toprim_2 DUF3872 Feature: gene Location: 6006-6563 bp Feature: domain Description: TraO Location: 6084-6558 bp Feature: domain Description: TraO Location: 6084 -6558 bp Feature: gene Location: 6570-6752 bp Feature: domain Description: zf-CHC2 Location: 6597-6738 bp Feature: domain Description: zf-CHC2 Location: 6597-6738 bp Feature: gene Location: 7300-9108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7564-8386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7564 -8386 bp Feature: domain Description: Intron_maturas2 Location: 8455-8764 bp Feature: domain Description: Intron_maturas2 Location: 84 55-8764 bp Feature: gene Location: 9080-9913 bp Feature: domain Description: Toprim_2 Location: 9632-9890 bp Feature: domain Description: Toprim_2 Location: 9632-9890 bp Feature: gene Location: 9910-10413 bp Feature: domain Description: DUF3872 Location: 9961-10348 bp Feature: domain Description: DUF3872 Location: 9961-1034 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraO (pfam10626), zf-CHC2 (pfam01807), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), DUF3872 (pfam12988)

Seq: QSRU01000028.1 Bacteroides uniformis strain TF07-2 TF07-2.Scaf28, whole genome shotgun sequence (30710 bp)
Overview 1 RT 1: 15499-19600 bp Neighborhood of RT #1 [15499, 19600] DUF4326 TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 15499-16032 bp Feature: domain Description: DUF4326 Location: 15514-15769 bp Feature: domain Description: DUF4326 Location: 15 5 14-15 769 bp Feature: gene Location: 16250-17476 bp Feature: domain Description: TraG-D_C Location: 16832-17165 bp Feature: domain Description: TraG-D_C Location: 16832-17165 bp Feature: gene Location: 17481-19133 bp Feature: RT Description: RVT_N Location: 17535-17778 bp Feature: RT Description: RVT_N Location: 175 35 -17778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17823-18471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17823-18471 bp Feature: domain Description: GIIM Note: maturase Location: 18525-18756 bp Feature: domain Description: GIIM Note: maturase Location: 185 25 -1875 6 bp Feature: gene Location: 19299-19433 bp Feature: gene Location: 19451-19600 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4326 (pfam14216), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSRU01000038.1 Bacteroides uniformis strain TF07-2 TF07-2.Scaf38, whole genome shotgun sequence (10982 bp)
Overview 1 RT 1: 58-9213 bp Neighborhood of RT #1 [58, 9215] RVT_N RVT-GII GIIM N6_Mtase COG4646 DUF1896 Feature: gene Location: 58-1341 bp Feature: gene Location: 1320-2993 bp Feature: RT Description: RVT_N Location: 1374-1617 bp Feature: RT Description: RVT_N Location: 1374-16 17 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 6 2-2310 bp Feature: domain Description: GIIM Note: maturase Location: 2364-2595 bp Feature: domain Description: GIIM Note: maturase Location: 236 4-2595 bp Feature: gene Location: 3651-8060 bp Feature: domain Description: N6_Mtase Location: 3684-4284 bp Feature: domain Description: N6 _Mtase Location: 36 84-4284 bp Feature: domain Description: COG4646 Location: 5616-7677 bp Feature: domain Description: COG46 46 Location: 56 16 -76 77 bp Feature: gene Location: 8628-9215 bp Feature: domain Description: DUF1896 Location: 8793-9213 bp Feature: domain Description: DUF1896 Location: 8793-9213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QSRU01000050.1 Bacteroides uniformis strain TF07-2 TF07-2.Scaf50, whole genome shotgun sequence (2508 bp)
Overview 1 RT 1: 582-2367 bp Neighborhood of RT #1 [582, 2405] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 582-2405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1668 bp Feature: domain Description: Intron_maturas2 Location: 1842-2085 bp Feature: domain Description: Intron_maturas2 Location: 1842-2085 bp Feature: domain Description: HNHc Note: nucleases Location: 2196-2367 bp Feature: domain Description: HNHc Note: nucleases Location: 2196-2367 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)