myRT

myRT report for GCA_003437495.1_ASM343749v1

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Seq: QSQS01000022.1 Parabacteroides distasonis strain TF10-4 TF10-4.Scaf22, whole genome shotgun sequence (18836 bp)
Overview 1 RT 1: 13259-16343 bp Neighborhood of RT #1 [13259, 16357] DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 13259-13621 bp Feature: domain Description: DUF4133 Location: 13304-13571 bp Feature: domain Description: DUF41 33 Location: 1 3304-1 3571 bp Feature: gene Location: 13632-13874 bp Feature: domain Description: DUF4134 Location: 13779-13869 bp Feature: domain Description: DUF41 34 Location: 1 3779-1 3869 bp Feature: gene Location: 13871-15526 bp Feature: RT Description: RVT_N Location: 13928-14165 bp Feature: RT Description: RVT_N Location: 1 3928-1 41 65 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14216-14864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 421 6-1 4864 bp Feature: domain Description: GIIM Note: maturase Location: 14921-15152 bp Feature: domain Description: GIIM Note: maturase Location: 1 4921 -1 51 52 bp Feature: gene Location: 15828-16121 bp Feature: gene Location: 16142-16357 bp Feature: domain Description: DUF4134 Location: 16160-16343 bp Feature: domain Description: DUF41 34 Location: 1 61 60-1 6343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSQS01000033.1 Parabacteroides distasonis strain TF10-4 TF10-4.Scaf33, whole genome shotgun sequence (2522 bp)
Overview 1 RT 1: 117-2375 bp Neighborhood of RT #1 [117, 2375] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 117-1949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402-1221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402 -12 2 1 bp Feature: domain Description: Intron_maturas2 Location: 1296-1605 bp Feature: domain Description: Intron_maturas2 Location: 12 96-1605 bp Feature: domain Description: HNHc Note: nucleases Location: 1779-1923 bp Feature: domain Description: HNHc Note: nucleases Location: 1779-192 3 bp Feature: gene Location: 1986-2375 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSQS01000004.1 Parabacteroides distasonis strain TF10-4 TF10-4.Scaf4, whole genome shotgun sequence (345420 bp)
Overview 1 RT 1: 333657-343950 bp Neighborhood of RT #1 [333657, 343950] N6_Mtase COG4646 RVT-GII Intron_maturas2 COG4646 Helicase_C Feature: gene Location: 333657-336722 bp Feature: domain Description: N6_Mtase Location: 333831-334437 bp Feature: domain Description: N6_Mtase Location: 3 3 3 83 1-3 3 443 7 bp Feature: domain Description: COG4646 Location: 335814-336711 bp Feature: domain Description: COG4646 Location: 3 3 5814-3 3 6711 bp Feature: gene Location: 336900-337253 bp Feature: gene Location: 337283-339088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337547-338369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 7547-3 3 83 69 bp Feature: domain Description: Intron_maturas2 Location: 338447-338765 bp Feature: domain Description: Intron_maturas2 Location: 3 3 8447-3 3 8765 bp Feature: gene Location: 339054-341858 bp Feature: domain Description: COG4646 Location: 339186-340332 bp Feature: domain Description: COG4646 Location: 3 3 9186-3 403 3 2 bp Feature: domain Description: Helicase_C Location: 340536-340743 bp Feature: domain Description: Helicase_C Location: 3 4053 6-3 40743 bp Feature: gene Location: 342331-343950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271)