myRT

myRT report for GCA_003437545.1_ASM343754v1

Download annotations/find similar RTs

Seq: QSQU01000104.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf104, whole genome shotgun sequence (2412 bp)
Overview 1 RT 1: 205-1911 bp Neighborhood of RT #1 [205, 2291] RVT_N RVT-GII GIIM Feature: gene Location: 205-411 bp Feature: gene Location: 591-2291 bp Feature: domain Description: RVT_N Location: 690-933 bp Feature: domain Description: RVT_N Location: 690-933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1 626 bp Feature: domain Description: GIIM Note: maturase Location: 1677-1911 bp Feature: domain Description: GIIM Note: maturase Location: 1 677-1 91 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSQU01000012.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf12, whole genome shotgun sequence (153994 bp)
Overview 1 RT 1: 123215-133386 bp Neighborhood of RT #1 [123215, 133424] Laminin_G_3 CotH LRR_AMN1 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 123215-130003 bp Feature: domain Description: Laminin_G_3 Location: 125651-126032 bp Feature: domain Description: Laminin_G_3 Location: 12 5651-12 6032 bp Feature: domain Description: CotH Location: 126296-127340 bp Feature: domain Description: CotH Location: 12 62 96-12 7340 bp Feature: domain Description: LRR_AMN1 Location: 127757-128228 bp Feature: domain Description: LRR_AMN1 Location: 12 7757-12 82 2 8 bp Feature: gene Location: 130198-130383 bp Feature: gene Location: 130437-131732 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 130653-131244 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 130653-1312 44 bp Feature: gene Location: 131734-132228 bp Feature: gene Location: 132279-133424 bp Feature: domain Description: Arm-DNA-bind_5 Location: 132303-132549 bp Feature: domain Description: Arm-DNA-bind_5 Location: 132 303-132 549 bp Feature: domain Description: Phage_int_SAM_5 Location: 132588-132873 bp Feature: domain Description: Phage_int_SAM_5 Location: 132 588-132 873 bp Feature: domain Description: INTN1_C_like Location: 132912-133386 bp Feature: domain Description: INTN1_C_like Location: 132 912 -133386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QSQU01000013.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf13, whole genome shotgun sequence (153296 bp)
Overview 1 RT 1: 23432-30836 bp Neighborhood of RT #1 [23432, 30871] PRK10371 group_II_RT_mat RVT-GII GIIM GH97_C Reg_prop Reg_prop Reg_prop Reg_prop Y_Y_Y BaeS PRK15347 HTH_AraC Feature: gene Location: 23432-24289 bp Feature: domain Description: PRK10371 Location: 23495-24260 bp Feature: domain Description: PRK103 71 Location: 23 495-24260 bp Feature: gene Location: 24749-25219 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 24923-25133 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 24923 -2513 3 bp Feature: gene Location: 25261-26154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25273-25720 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25273 -25720 bp Feature: domain Description: GIIM Note: maturase Location: 25777-25981 bp Feature: domain Description: GIIM Note: maturase Location: 25777-25981 bp Feature: gene Location: 26453-26698 bp Feature: domain Description: GH97_C Location: 26462-26693 bp Feature: domain Description: GH97_C Location: 26462-26693 bp Feature: gene Location: 26831-30871 bp Feature: domain Description: Reg_prop Location: 26930-26996 bp Feature: domain Description: Reg_prop Location: 2693 0-26996 bp Feature: domain Description: Reg_prop Location: 27755-27821 bp Feature: domain Description: Reg_prop Location: 27755-27821 bp Feature: domain Description: Reg_prop Location: 28013-28073 bp Feature: domain Description: Reg_prop Location: 28013 -28073 bp Feature: domain Description: Reg_prop Location: 28139-28202 bp Feature: domain Description: Reg_prop Location: 2813 9-28202 bp Feature: domain Description: Y_Y_Y Location: 28976-29168 bp Feature: domain Description: Y_Y_Y Location: 28976-29168 bp Feature: domain Description: BaeS Location: 29252-30017 bp Feature: domain Description: BaeS Location: 29252-3 0017 bp Feature: domain Description: PRK15347 Location: 30128-30626 bp Feature: domain Description: PRK153 47 Location: 3 0128-3 0626 bp Feature: domain Description: HTH_AraC Location: 30746-30836 bp Feature: domain Description: HTH_AraC Location: 3 0746-3 083 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10371 (transcriptional regulator MelR), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), GH97_C (pfam14509), Reg_prop (pfam07494), Y_Y_Y (pfam07495), BaeS (COG0642), PRK15347 (two component system sensor kinase), HTH_AraC (pfam00165)

Seq: QSQU01000014.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf14, whole genome shotgun sequence (133753 bp)
Overview 1 RT 1: 52640-59533 bp 2 RT 2: 114584-116607 bp Neighborhood of RT #1 [52640, 59544] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc DUF4141 Bac_Flav_CT_J Neighborhood of RT #2 [114584, 116642] DDE_Tnp_IS66_C group_II_RT_mat RVT-GII Translocase_SecB Feature: gene Location: 52640-55288 bp Feature: domain Description: Bac_Flav_CT_G Location: 52895-55280 bp Feature: domain Description: Bac_Flav_CT_G Location: 52895-55280 bp Feature: gene Location: 55302-55454 bp Feature: gene Location: 55836-57659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56100-56922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56100-56922 bp Feature: domain Description: Intron_maturas2 Location: 57096-57297 bp Feature: domain Description: Intron_maturas2 Location: 57096-57297 bp Feature: domain Description: HNHc Note: nucleases Location: 57450-57621 bp Feature: domain Description: HNHc Note: nucleases Location: 574 50-57621 bp Feature: gene Location: 57903-58529 bp Feature: domain Description: DUF4141 Location: 57915-58068 bp Feature: domain Description: DUF4 14 1 Location: 57915-58068 bp Feature: gene Location: 58543-59544 bp Feature: domain Description: Bac_Flav_CT_J Location: 58570-59533 bp Feature: domain Description: Bac_Flav_CT_J Location: 58570-59533 bp Feature: gene Location: 114584-114784 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 114596-114698 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 114 596-114 698 bp Feature: gene Location: 114880-115182 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 114928-115165 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 114 928-115165 bp Feature: gene Location: 115239-115559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 115242-115479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11524 2-1154 79 bp Feature: gene Location: 115964-116197 bp Feature: gene Location: 116226-116642 bp Feature: domain Description: Translocase_SecB Location: 116283-116607 bp Feature: domain Description: Translocase_SecB Location: 116283-116607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605), Bac_Flav_CT_J (TIGR03782), DDE_Tnp_IS66_C (pfam13817), group_II_RT_mat (TIGR04416), Translocase_SecB (cl00251)

Seq: QSQU01000002.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf2, whole genome shotgun sequence (291518 bp)
Overview 1 RT 1: 20004-25326 bp Neighborhood of RT #1 [20004, 29447] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 20004-20246 bp Feature: gene Location: 20426-20911 bp Feature: gene Location: 20908-22212 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21121-21715 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21121-21715 bp Feature: gene Location: 22314-22532 bp Feature: gene Location: 22728-29447 bp Feature: domain Description: Laminin_G_3 Location: 24171-24249 bp Feature: domain Description: Laminin_G_3 Location: 24171-24249 bp Feature: domain Description: Laminin_G_3 Location: 24900-25326 bp Feature: domain Description: Laminin_G_3 Location: 24900-25 326 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QSQU01000021.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf21, whole genome shotgun sequence (108730 bp)
Overview 1 RT 1: 65047-69727 bp Neighborhood of RT #1 [65047, 69768] RVT-UG12 PRK10276 VRR_NUC Feature: gene Location: 65047-65610 bp Feature: gene Location: 65898-66161 bp Feature: gene Location: 66477-68378 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 66837-67329 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 6 6 837-6 7329 bp Feature: gene Location: 68864-69073 bp Feature: domain Description: PRK10276 Location: 68885-69071 bp Feature: domain Description: PRK10276 Location: 6 8885-6 9071 bp Feature: gene Location: 69295-69768 bp Feature: domain Description: VRR_NUC Location: 69499-69727 bp Feature: domain Description: VRR_NUC Location: 6 9499-6 9727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG12, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), VRR_NUC (smart00990)

Seq: QSQU01000035.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf35, whole genome shotgun sequence (54231 bp)
Overview 1 RT 1: 13508-20307 bp Neighborhood of RT #1 [13508, 20513] dnaG RVT-UG24 UT HTH_XRE Feature: gene Location: 13508-14596 bp Feature: domain Description: dnaG Location: 13655-14588 bp Feature: domain Description: dnaG Location: 13655-14588 bp Feature: gene Location: 14601-15341 bp Feature: gene Location: 15319-18753 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 15838-16300 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 15838-16300 bp Feature: gene Location: 18966-19811 bp Feature: domain Description: UT Location: 18996-19803 bp Feature: domain Description: UT Location: 18996-19803 bp Feature: gene Location: 20106-20513 bp Feature: domain Description: HTH_XRE Location: 20145-20307 bp Feature: domain Description: HTH_XRE Location: 20145-20307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, UT (pfam03253), HTH_XRE (smart00530)

Seq: QSQU01000041.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf41, whole genome shotgun sequence (39998 bp)
Overview 1 RT 1: 26490-32606 bp Neighborhood of RT #1 [26490, 32606] T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc Relaxase Feature: gene Location: 26490-28211 bp Feature: domain Description: T4SS-DNA_transf Location: 26673-27864 bp Feature: domain Description: T4SS-DNA_transf Location: 26673-278 64 bp Feature: gene Location: 28556-29446 bp Feature: gene Location: 29639-31444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29903-30725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29903-30725 bp Feature: domain Description: Intron_maturas2 Location: 30803-31109 bp Feature: domain Description: Intron_maturas2 Location: 308 03-31109 bp Feature: domain Description: HNHc Note: nucleases Location: 31271-31415 bp Feature: domain Description: HNHc Note: nucleases Location: 31271-31415 bp Feature: gene Location: 31997-32212 bp Feature: domain Description: Relaxase Location: 32003-32204 bp Feature: domain Description: Relaxase Location: 32003-32204 bp Feature: gene Location: 32361-32606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T4SS-DNA_transf (pfam02534), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Relaxase (pfam03432)

Seq: QSQU01000047.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf47, whole genome shotgun sequence (29227 bp)
Overview 1 RT 1: 19409-27673 bp Neighborhood of RT #1 [19409, 27687] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 DUF4134 RVT_N RVT-GII GIIM DUF4134 Feature: gene Location: 19409-19723 bp Feature: domain Description: DUF3876 Location: 19463-19712 bp Feature: domain Description: DUF3876 Location: 19 463-19 712 bp Feature: gene Location: 19738-21432 bp Feature: domain Description: Bac_Flav_CT_G Location: 19858-21424 bp Feature: domain Description: Bac_Flav_CT_G Location: 19 858-21424 bp Feature: gene Location: 21429-23090 bp Feature: domain Description: RVT_N Location: 21483-21726 bp Feature: domain Description: RVT_N Location: 21483-21726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21771-22419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21771-22419 bp Feature: domain Description: GIIM Note: maturase Location: 22473-22704 bp Feature: domain Description: GIIM Note: maturase Location: 22473-22704 bp Feature: gene Location: 23172-23552 bp Feature: gene Location: 23674-24612 bp Feature: domain Description: Bac_Flav_CT_G Location: 23677-24598 bp Feature: domain Description: Bac_Flav_CT_G Location: 23677-2459 8 bp Feature: gene Location: 24609-24932 bp Feature: domain Description: DUF4133 Location: 24624-24891 bp Feature: domain Description: DUF4133 Location: 24624-2489 1 bp Feature: gene Location: 24956-25198 bp Feature: domain Description: DUF4134 Location: 25103-25193 bp Feature: domain Description: DUF4134 Location: 25103-2519 3 bp Feature: gene Location: 25195-26850 bp Feature: domain Description: RVT_N Location: 25252-25489 bp Feature: domain Description: RVT_N Location: 25252-25489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25540-26188 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25540-26188 bp Feature: domain Description: GIIM Note: maturase Location: 26245-26476 bp Feature: domain Description: GIIM Note: maturase Location: 26245-26476 bp Feature: gene Location: 27152-27445 bp Feature: gene Location: 27466-27687 bp Feature: domain Description: DUF4134 Location: 27496-27673 bp Feature: domain Description: DUF4134 Location: 2749 6-27673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), DUF4134 (pfam13572)

Seq: QSQU01000049.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf49, whole genome shotgun sequence (27951 bp)
Overview 1 RT 1: 14148-26534 bp Neighborhood of RT #1 [14148, 26659] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 14148-15947 bp Feature: domain Description: rpsA Location: 14217-15816 bp Feature: domain Description: rpsA Location: 14217-15816 bp Feature: gene Location: 16044-22070 bp Feature: domain Description: DUF4011 Location: 17274-17787 bp Feature: domain Description: DUF4011 Location: 17274-17787 bp Feature: domain Description: DEXXQc_SF1 Location: 18126-18555 bp Feature: domain Description: DEXXQc_SF1 Location: 18126-18555 bp Feature: domain Description: DEXXQc_SF1 Location: 19554-20313 bp Feature: domain Description: DEXXQc_SF1 Location: 19554-20313 bp Feature: domain Description: TIGR00376 Location: 20442-20832 bp Feature: domain Description: TIGR00376 Location: 20442-20832 bp Feature: domain Description: MTES_1575 Location: 20985-21270 bp Feature: domain Description: MTES_1575 Location: 20985-21270 bp Feature: domain Description: DUF3320 Location: 21585-21720 bp Feature: domain Description: DUF3320 Location: 21585-21720 bp Feature: gene Location: 22121-23251 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22442-22985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22442-22985 bp Feature: gene Location: 23459-25666 bp Feature: gene Location: 25835-26659 bp Feature: domain Description: PDDEXK_2 Location: 25856-26534 bp Feature: domain Description: PDDEXK_2 Location: 25856-26534 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: QSQU01000061.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf61, whole genome shotgun sequence (20727 bp)
Overview 1 RT 1: 2602-5558 bp Neighborhood of RT #1 [2602, 5558] RVT-GII GIIM Feature: gene Location: 2602-2958 bp Feature: gene Location: 3004-3225 bp Feature: gene Location: 3536-4831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3731-4346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3731-4346 bp Feature: domain Description: GIIM Note: maturase Location: 4418-4631 bp Feature: domain Description: GIIM Note: maturase Location: 4418-4631 bp Feature: gene Location: 5064-5228 bp Feature: gene Location: 5361-5558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSQU01000075.1 Bacteroides xylanisolvens strain TF10-34 TF10-34.Scaf75, whole genome shotgun sequence (9534 bp)
Overview 1 RT 1: 2635-9358 bp Neighborhood of RT #1 [2635, 9358] KAP_NTPase TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 2635-5889 bp Feature: domain Description: KAP_NTPase Location: 2773-3751 bp Feature: domain Description: KAP_NTPase Location: 2773-3751 bp Feature: gene Location: 6021-7235 bp Feature: domain Description: TraG-D_C Location: 6603-6933 bp Feature: domain Description: TraG-D_C Location: 6603-6933 bp Feature: gene Location: 7240-8892 bp Feature: domain Description: RVT_N Location: 7294-7537 bp Feature: domain Description: RVT_N Location: 7294-7537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7582-8230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7582-8230 bp Feature: domain Description: GIIM Note: maturase Location: 8284-8515 bp Feature: domain Description: GIIM Note: maturase Location: 8284-8515 bp Feature: gene Location: 8974-9147 bp Feature: gene Location: 9209-9358 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)