myRT

myRT report for GCA_003437595.1_ASM343759v1

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Seq: QSQX01000018.1 [Clostridium] bolteae strain TF09-4AC TF09-4AC.Scaf18, whole genome shotgun sequence (123275 bp)
Overview 1 RT 1: 1-3943 bp 2 RT 2: 103872-106536 bp Neighborhood of RT #1 [1, 3957] RVT-GII GIIM HpcH PBP2_TRAP_Siap Neighborhood of RT #2 [103872, 106553] Phage_XkdX RVT-DGRs Phage_holin_5_2 Feature: gene Location: 1-165 bp Feature: gene Location: 557-1798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761 -1 41 8 bp Feature: domain Description: GIIM Note: maturase Location: 1499-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1 499-1 71 8 bp Feature: gene Location: 2075-2848 bp Feature: domain Description: HpcH Location: 2081-2831 bp Feature: domain Description: HpcH Location: 2081 -2831 bp Feature: gene Location: 2863-3957 bp Feature: domain Description: PBP2_TRAP_Siap Location: 3043-3943 bp Feature: domain Description: PBP2_TRAP_Siap Location: 3043-3943 bp Feature: gene Location: 103872-104015 bp Feature: domain Description: Phage_XkdX Location: 103893-104010 bp Feature: domain Description: Phage_XkdX Location: 1 03893-1 0401 0 bp Feature: gene Location: 104012-104497 bp Feature: gene Location: 104708-105904 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 104903-105626 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 04903-1 05626 bp Feature: gene Location: 105907-106245 bp Feature: gene Location: 106257-106553 bp Feature: domain Description: Phage_holin_5_2 Location: 106305-106536 bp Feature: domain Description: Phage_holin_5_2 Location: 1 06305-1 06536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HpcH (COG3836), PBP2_TRAP_Siap (cd13672), RVT-GII, GIIM (pfam08388), Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079)

Seq: QSQX01000004.1 [Clostridium] bolteae strain TF09-4AC TF09-4AC.Scaf4, whole genome shotgun sequence (380059 bp)
Overview 1 RT 1: 46868-51663 bp Neighborhood of RT #1 [46868, 51674] UgpA UgpE RVT-Retrons NAT_SF YoaP spoVFB Feature: gene Location: 46868-47746 bp Feature: domain Description: UgpA Location: 46886-47732 bp Feature: domain Description: UgpA Location: 46886-47732 bp Feature: gene Location: 47761-48594 bp Feature: domain Description: UgpE Location: 47776-48589 bp Feature: domain Description: UgpE Location: 47776-48589 bp Feature: gene Location: 49026-50033 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49191-49746 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49191-49746 bp Feature: gene Location: 50045-50788 bp Feature: domain Description: NAT_SF Location: 50255-50369 bp Feature: domain Description: NAT_SF Location: 502 55-50369 bp Feature: domain Description: YoaP Location: 50651-50777 bp Feature: domain Description: YoaP Location: 50651-50777 bp Feature: gene Location: 51090-51674 bp Feature: domain Description: spoVFB Location: 51093-51663 bp Feature: domain Description: spoVFB Location: 51093-51663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpA (COG1175), UgpE (COG0395), RVT-Retrons, NAT_SF (cl17182), YoaP (pfam14268), spoVFB (PRK08305)

Seq: QSQX01000040.1 [Clostridium] bolteae strain TF09-4AC TF09-4AC.Scaf40, whole genome shotgun sequence (2805 bp)
Overview 1 RT 1: 93-1860 bp Neighborhood of RT #1 [93, 2066] RVT-GII HNHc Feature: gene Location: 93-2066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 429-1167 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-1860 bp Feature: domain Description: HNHc Note: nucleases Location: 1722-1860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QSQX01000041.1 [Clostridium] bolteae strain TF09-4AC TF09-4AC.Scaf41, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 279-2366 bp Neighborhood of RT #1 [279, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 8-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: Intron_maturas2 Location: 1739-204 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSQX01000008.1 [Clostridium] bolteae strain TF09-4AC TF09-4AC.Scaf8, whole genome shotgun sequence (301870 bp)
Overview 1 RT 1: 188797-192121 bp 2 RT 2: 297186-301669 bp Neighborhood of RT #1 [188797, 192121] RVT-DGRs Neighborhood of RT #2 [297186, 301836] PRK08270 NrdH RVT-GII GIIM Feature: gene Location: 188797-189393 bp Feature: gene Location: 189335-189640 bp Feature: gene Location: 189699-190898 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189894-190617 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 189894-190617 bp Feature: gene Location: 191146-191445 bp Feature: gene Location: 191951-192121 bp Feature: gene Location: 297186-299606 bp Feature: domain Description: PRK08270 Location: 297192-299172 bp Feature: domain Description: PRK08270 Location: 297192-299172 bp Feature: domain Description: NrdH Location: 299376-299553 bp Feature: domain Description: NrdH Location: 299376-2995 5 3 bp Feature: gene Location: 299617-299913 bp Feature: gene Location: 300445-301836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300760-301387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300760-301387 bp Feature: domain Description: GIIM Note: maturase Location: 301441-301669 bp Feature: domain Description: GIIM Note: maturase Location: 301441-301669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, PRK08270 (ribonucleoside triphosphate reductase), NrdH (cd02976), RVT-GII, GIIM (pfam08388)