myRT

myRT report for GCA_003437625.1_ASM343762v1

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Seq: QSRD01000122.1 Prevotella disiens strain TF09-12 TF09-12.Scaf122, whole genome shotgun sequence (5447 bp)
Overview 1 RT 1: 457-4283 bp Neighborhood of RT #1 [457, 4283] Rhs_assc_core RVT-GII GIIM Feature: gene Location: 457-1143 bp Feature: domain Description: Rhs_assc_core Location: 595-820 bp Feature: domain Description: Rhs_assc_core Location: 595-820 bp Feature: gene Location: 1293-1463 bp Feature: gene Location: 1840-3246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2182-2800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 82-2800 bp Feature: domain Description: GIIM Note: maturase Location: 2854-3058 bp Feature: domain Description: GIIM Note: maturase Location: 2854-3058 bp Feature: gene Location: 3379-3909 bp Feature: gene Location: 4005-4283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Rhs_assc_core (TIGR03696)

Seq: QSRD01000170.1 Prevotella disiens strain TF09-12 TF09-12.Scaf170, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 118-2299 bp Neighborhood of RT #1 [118, 2299] RVT-GII Intron_maturas2 Feature: gene Location: 118-1929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382-1204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382 -12 04 bp Feature: domain Description: Intron_maturas2 Location: 1273-1582 bp Feature: domain Description: Intron_maturas2 Location: 12 73-1582 bp Feature: gene Location: 1964-2299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSRD01000076.1 Prevotella disiens strain TF09-12 TF09-12.Scaf76, whole genome shotgun sequence (10461 bp)
Overview 1 RT 1: 4022-9822 bp Neighborhood of RT #1 [4022, 9971] DUF1896 RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_XRE Feature: gene Location: 4022-4483 bp Feature: gene Location: 4509-4976 bp Feature: domain Description: DUF1896 Location: 4521-4947 bp Feature: domain Description: DUF1896 Location: 4521-4947 bp Feature: gene Location: 5209-7017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5473-6295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5473 -6295 bp Feature: domain Description: Intron_maturas2 Location: 6406-6676 bp Feature: domain Description: Intron_maturas2 Location: 6406-6676 bp Feature: gene Location: 7564-8856 bp Feature: domain Description: Arm-DNA-bind_5 Location: 7720-7978 bp Feature: domain Description: Arm-DNA-bind_5 Location: 7720-7978 bp Feature: domain Description: Phage_int_SAM_5 Location: 8020-8323 bp Feature: domain Description: Phage_int_SAM_5 Location: 8020-83 23 bp Feature: domain Description: INTN1_C_like Location: 8374-8839 bp Feature: domain Description: INTN1_C_like Location: 83 74-883 9 bp Feature: gene Location: 9636-9971 bp Feature: domain Description: HTH_XRE Location: 9657-9822 bp Feature: domain Description: HTH_XRE Location: 9657-9822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_XRE (smart00530)