myRT

myRT report for GCA_003437665.1_ASM343766v1

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Seq: QSRF01000012.1 Blautia obeum strain TF09-10AC TF09-10AC.Scaf12, whole genome shotgun sequence (127815 bp)
Overview 1 RT 1: 5312-9855 bp Neighborhood of RT #1 [5312, 9855] ABC_trans_CmpB RVT-DGRs Feature: gene Location: 5312-5737 bp Feature: domain Description: ABC_trans_CmpB Location: 5369-5675 bp Feature: domain Description: ABC_trans_CmpB Location: 5369-5675 bp Feature: gene Location: 5734-6423 bp Feature: gene Location: 6416-7765 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6719-7373 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 671 9-7373 bp Feature: gene Location: 7691-8092 bp Feature: gene Location: 8167-9855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_trans_CmpB (pfam06541), RVT-DGRs

Seq: QSRF01000021.1 Blautia obeum strain TF09-10AC TF09-10AC.Scaf21, whole genome shotgun sequence (46531 bp)
Overview 1 RT 1: 19378-37215 bp Neighborhood of RT #1 [19378, 37427] ArdC YodL DUF3849 LPD18 LPD16 LPD16 RVT_N RVT-GII YkfC YtxK COG4646 KOG1000 PRK07726 Feature: gene Location: 19378-24753 bp Feature: domain Description: ArdC Location: 19600-20191 bp Feature: domain Description: ArdC Location: 19600-2 0191 bp Feature: domain Description: YodL Location: 21418-21709 bp Feature: domain Description: YodL Location: 2 1418-2 1709 bp Feature: domain Description: DUF3849 Location: 21766-22141 bp Feature: domain Description: DUF3849 Location: 2 1766-2 2 141 bp Feature: domain Description: LPD18 Location: 22180-22426 bp Feature: domain Description: LPD18 Location: 2 2 180-2 2 42 6 bp Feature: domain Description: LPD16 Location: 22936-23164 bp Feature: domain Description: LPD16 Location: 2 2 936-2 3164 bp Feature: domain Description: LPD16 Location: 23290-23491 bp Feature: domain Description: LPD16 Location: 2 32 90-2 3491 bp Feature: gene Location: 24793-25851 bp Feature: gene Location: 25852-27522 bp Feature: RT Description: RVT_N Location: 25897-26140 bp Feature: RT Description: RVT_N Location: 2 5897-2 6140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26185-26833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6185-2 6833 bp Feature: domain Description: YkfC Location: 26941-27136 bp Feature: domain Description: YkfC Location: 2 6941-2 7136 bp Feature: gene Location: 28101-35312 bp Feature: domain Description: YtxK Location: 31569-32193 bp Feature: domain Description: YtxK Location: 31569-32 193 bp Feature: domain Description: COG4646 Location: 32256-34815 bp Feature: domain Description: COG4646 Location: 32 2 56-34815 bp Feature: domain Description: KOG1000 Location: 35169-35295 bp Feature: domain Description: KOG1000 Location: 35169-352 95 bp Feature: gene Location: 35331-37427 bp Feature: domain Description: PRK07726 Location: 35346-37215 bp Feature: domain Description: PRK0772 6 Location: 35346-372 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), YodL (pfam14191), DUF3849 (pfam12960), LPD18 (pfam18832), LPD16 (pfam18830), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )
KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), PRK07726 (DNA topoisomerase 3)

Seq: QSRF01000038.1 Blautia obeum strain TF09-10AC TF09-10AC.Scaf38, whole genome shotgun sequence (2827 bp)
Overview 1 RT 1: 105-1985 bp Neighborhood of RT #1 [105, 2014] RVT-GII RVT-GII Feature: gene Location: 105-1136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-291 bp Feature: gene Location: 1289-2014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1598-1985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1598-1985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSRF01000040.1 Blautia obeum strain TF09-10AC TF09-10AC.Scaf40, whole genome shotgun sequence (2505 bp)
Overview 1 RT 1: 279-2366 bp Neighborhood of RT #1 [279, 2401] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 279-545 bp Feature: gene Location: 584-2401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 8-1667 bp Feature: domain Description: Intron_maturas2 Location: 1739-2042 bp Feature: domain Description: Intron_maturas2 Location: 1739-204 2 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Feature: domain Description: HNHc Note: nucleases Location: 2222-2366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSRF01000009.1 Blautia obeum strain TF09-10AC TF09-10AC.Scaf9, whole genome shotgun sequence (143198 bp)
Overview 1 RT 1: 128961-133698 bp Neighborhood of RT #1 [128961, 133698] HipB S24_LexA-like RVT_N RVT-GII GIIM PRK03103 Feature: gene Location: 128961-129134 bp Feature: gene Location: 129127-129834 bp Feature: domain Description: HipB Location: 129145-129496 bp Feature: domain Description: HipB Location: 129145 -129496 bp Feature: domain Description: S24_LexA-like Location: 129589-129826 bp Feature: domain Description: S24_LexA-like Location: 1295 89-129826 bp Feature: gene Location: 130641-132116 bp Feature: RT Description: RVT_N Location: 130692-130929 bp Feature: RT Description: RVT_N Location: 130692-130929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130980-131628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130980-131628 bp Feature: domain Description: GIIM Note: maturase Location: 131679-131913 bp Feature: domain Description: GIIM Note: maturase Location: 131679-131913 bp Feature: gene Location: 132113-133447 bp Feature: domain Description: PRK03103 Location: 132239-133373 bp Feature: domain Description: PRK03103 Location: 132239-133373 bp Feature: gene Location: 133453-133698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), S24_LexA-like (cd06529), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK03103 (DNA polymerase IV; Reviewed)