myRT

myRT report for GCA_003437885.1_ASM343788v1

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Seq: QSSO01000002.1 Butyricimonas virosa strain TF05-17 TF05-17.Scaf2, whole genome shotgun sequence (246793 bp)
Overview 1 RT 1: 21673-26087 bp 2 RT 2: 159971-163179 bp Neighborhood of RT #1 [21673, 27145] CcmA RVT-GII PKD_2 Neighborhood of RT #2 [159971, 163179] RVT-UG27 Feature: gene Location: 21673-23298 bp Feature: gene Location: 23295-24095 bp Feature: domain Description: CcmA Location: 23313-23997 bp Feature: domain Description: CcmA Location: 2331 3-23997 bp Feature: gene Location: 24719-25144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25061-25142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25061 -251 42 bp Feature: gene Location: 25376-25510 bp Feature: gene Location: 25664-27145 bp Feature: domain Description: PKD_2 Location: 25718-26087 bp Feature: domain Description: PKD_2 Location: 2571 8-26087 bp Feature: gene Location: 159971-160249 bp Feature: gene Location: 160279-160545 bp Feature: gene Location: 160595-161857 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 160787-161423 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 60787-1 61 423 bp Feature: gene Location: 161850-162518 bp Feature: gene Location: 162532-163179 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), RVT-GII, PKD_2 (pfam16407), RVT-UG27

Seq: QSSO01000067.1 Butyricimonas virosa strain TF05-17 TF05-17.Scaf67, whole genome shotgun sequence (2499 bp)
Overview 1 RT 1: 55-2353 bp Neighborhood of RT #1 [55, 2376] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 55-252 bp Feature: gene Location: 550-2376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1657 bp Feature: domain Description: Intron_maturas2 Location: 1729-2053 bp Feature: domain Description: Intron_maturas2 Location: 172 9-2 053 bp Feature: domain Description: HNHc Note: nucleases Location: 2206-2353 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 06-2 353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSSO01000009.1 Butyricimonas virosa strain TF05-17 TF05-17.Scaf9, whole genome shotgun sequence (142120 bp)
Overview 1 RT 1: 36609-41437 bp Neighborhood of RT #1 [36609, 41437] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 36609-38012 bp Feature: gene Location: 38295-39224 bp Feature: domain Description: Toprim_2 Location: 38847-39135 bp Feature: domain Description: Toprim_2 Location: 3 8847-3 913 5 bp Feature: gene Location: 39196-41004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39460-40282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 9460-40282 bp Feature: domain Description: Intron_maturas2 Location: 40351-40660 bp Feature: domain Description: Intron_maturas2 Location: 403 51-40660 bp Feature: gene Location: 41006-41188 bp Feature: gene Location: 41294-41437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)