myRT

myRT report for GCA_003437905.1_ASM343790v1

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Seq: QSSQ01000013.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf13, whole genome shotgun sequence (135134 bp)
Overview 1 RT 1: 81164-89849 bp 2 RT 2: 125128-129345 bp Neighborhood of RT #1 [81164, 90553] SIR2 Piwi_piwi-like_ProArk RVT-Retrons Trypsin_2 KAP_NTPase Neighborhood of RT #2 [125128, 129392] DDE_Tnp_IS66 RVT-Retrons RVT-Retrons YhcG_C Feature: gene Location: 81164-82570 bp Feature: gene Location: 82687-85827 bp Feature: domain Description: SIR2 Location: 82756-83254 bp Feature: domain Description: SIR2 Location: 82756-83254 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 84517-85774 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 8451 7-85774 bp Feature: gene Location: 86034-87698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86184-86775 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 861 84-86775 bp Feature: domain Description: Trypsin_2 Location: 87192-87603 bp Feature: domain Description: Trypsin_2 Location: 871 92-87603 bp Feature: gene Location: 87963-88322 bp Feature: gene Location: 88538-90553 bp Feature: domain Description: KAP_NTPase Location: 88706-89849 bp Feature: domain Description: KAP_NTPase Location: 88706-89849 bp Feature: gene Location: 125128-126669 bp Feature: domain Description: DDE_Tnp_IS66 Location: 125770-126571 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 25770-1 26571 bp Feature: gene Location: 127015-127983 bp Feature: gene Location: 127983-128312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128082-128232 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 28082-1 28232 bp Feature: gene Location: 128384-128890 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 128393-128660 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 28393-1 28660 bp Feature: gene Location: 128893-129024 bp Feature: gene Location: 129198-129392 bp Feature: domain Description: YhcG_C Location: 129234-129345 bp Feature: domain Description: YhcG_C Location: 1 29234-1 29345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2 (pfam02146), Piwi_piwi-like_ProArk (cd04659), RVT-Retrons, Trypsin_2 (pfam13365), KAP_NTPase (pfam07693), DDE_Tnp_IS66 (pfam03050), YhcG_C

Seq: QSSQ01000024.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf24, whole genome shotgun sequence (101411 bp)
Overview 1 RT 1: 86360-91381 bp Neighborhood of RT #1 [86360, 91381] PRK06545 PRK14806 RVT-Retrons DUF2871 Feature: gene Location: 86360-87457 bp Feature: domain Description: PRK06545 Location: 86375-87431 bp Feature: domain Description: PRK06545 Location: 86375-87431 bp Feature: gene Location: 87482-88759 bp Feature: domain Description: PRK14806 Location: 87494-88736 bp Feature: domain Description: PRK14806 Location: 87494-88736 bp Feature: gene Location: 88905-89915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89070-89625 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89070-8962 5 bp Feature: gene Location: 90259-90702 bp Feature: domain Description: DUF2871 Location: 90295-90685 bp Feature: domain Description: DUF2 871 Location: 902 95-90685 bp Feature: gene Location: 90704-91381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06545 (prephenate dehydrogenase; Validated), PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), RVT-Retrons, DUF2871 (pfam11070)

Seq: QSSQ01000003.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf3, whole genome shotgun sequence (301844 bp)
Overview 1 RT 1: 11730-17961 bp Neighborhood of RT #1 [11730, 18062] UgpE RVT-GII LacZ AAA-ATPase_like PDDEXK_9 Feature: gene Location: 11730-12500 bp Feature: domain Description: UgpE Location: 11736-12495 bp Feature: domain Description: UgpE Location: 1173 6-12495 bp Feature: gene Location: 12765-12938 bp Feature: gene Location: 12988-14286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13243-13933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 243 -13 93 3 bp Feature: gene Location: 14415-16289 bp Feature: domain Description: LacZ Location: 14493-15678 bp Feature: domain Description: LacZ Location: 14493 -15678 bp Feature: gene Location: 16428-18062 bp Feature: domain Description: AAA-ATPase_like Location: 16500-17310 bp Feature: domain Description: AAA-ATPase_like Location: 16500-173 10 bp Feature: domain Description: PDDEXK_9 Location: 17769-17961 bp Feature: domain Description: PDDEXK_9 Location: 17769-17961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), RVT-GII, LacZ (COG3250), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: QSSQ01000005.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf5, whole genome shotgun sequence (245799 bp)
Overview 1 RT 1: 15855-19229 bp 2 RT 2: 29379-40108 bp Neighborhood of RT #1 [15855, 19229] SpoVG RVT-GII HNHc Neighborhood of RT #2 [29379, 40821] DUF3991 Toprim_2 COG4646 KOG1000 RVT-GII HNHc ParB_N_like Feature: gene Location: 15855-16139 bp Feature: domain Description: SpoVG Location: 15882-16107 bp Feature: domain Description: SpoVG Location: 15882-16107 bp Feature: gene Location: 16153-16404 bp Feature: gene Location: 16665-18536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16980-17706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16980-17706 bp Feature: domain Description: HNHc Note: nucleases Location: 18258-18426 bp Feature: domain Description: HNHc Note: nucleases Location: 18258-184 26 bp Feature: gene Location: 18615-18872 bp Feature: gene Location: 19080-19229 bp Feature: gene Location: 29379-30389 bp Feature: domain Description: DUF3991 Location: 29760-29973 bp Feature: domain Description: DUF3991 Location: 29760-29973 bp Feature: domain Description: Toprim_2 Location: 30018-30198 bp Feature: domain Description: Toprim_2 Location: 30018-30198 bp Feature: gene Location: 30400-34569 bp Feature: domain Description: COG4646 Location: 30565-33259 bp Feature: domain Description: COG4 64 6 Location: 30565-33259 bp Feature: domain Description: KOG1000 Location: 33529-33829 bp Feature: domain Description: KOG1000 Location: 33529-33829 bp Feature: gene Location: 34839-36710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35160-35895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35160-35895 bp Feature: domain Description: HNHc Note: nucleases Location: 36450-36591 bp Feature: domain Description: HNHc Note: nucleases Location: 364 50-36591 bp Feature: gene Location: 37389-39680 bp Feature: gene Location: 39712-40821 bp Feature: domain Description: ParB_N_like Location: 39862-40108 bp Feature: domain Description: ParB_N_like Location: 39862-4 0108 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVG (pfam04026), RVT-GII, HNHc (smart00507), DUF3991 (pfam13154), Toprim_2 (pfam13155), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), ParB_N_like (cd16411)

Seq: QSSQ01000070.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf70, whole genome shotgun sequence (24889 bp)
Overview 1 RT 1: 1122-6605 bp Neighborhood of RT #1 [1122, 6605] pilus_cpaB PulO RVT-GII Intron_maturas2 Feature: gene Location: 1122-1895 bp Feature: domain Description: pilus_cpaB Location: 1158-1827 bp Feature: domain Description: pilus_cpaB Location: 115 8-1827 bp Feature: gene Location: 1912-2301 bp Feature: domain Description: PulO Location: 1954-2281 bp Feature: domain Description: PulO Location: 195 4-2281 bp Feature: gene Location: 2512-4329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776-3607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2776-3607 bp Feature: domain Description: Intron_maturas2 Location: 3679-3985 bp Feature: domain Description: Intron_maturas2 Location: 3679-3985 bp Feature: gene Location: 4387-4581 bp Feature: gene Location: 4869-6605 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pilus_cpaB (TIGR03177), PulO (COG1989), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSSQ01000081.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf81, whole genome shotgun sequence (12227 bp)
Overview 1 RT 1: 414-3425 bp Neighborhood of RT #1 [414, 3425] HTH_16 sigma70-ECF RVT-GII GIIM Feature: gene Location: 414-620 bp Feature: domain Description: HTH_16 Location: 429-588 bp Feature: domain Description: HTH_16 Location: 429-588 bp Feature: gene Location: 610-1050 bp Feature: domain Description: sigma70-ECF Location: 634-1024 bp Feature: domain Description: sigma70-ECF Location: 6 34-1024 bp Feature: gene Location: 1236-2540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1437-2055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1437-2055 bp Feature: domain Description: GIIM Note: maturase Location: 2109-2322 bp Feature: domain Description: GIIM Note: maturase Location: 2109-2322 bp Feature: gene Location: 2896-3033 bp Feature: gene Location: 3231-3425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_16 (pfam12645), sigma70-ECF (TIGR02937)

Seq: QSSQ01000082.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf82, whole genome shotgun sequence (12067 bp)
Overview 1 RT 1: 1-2859 bp Neighborhood of RT #1 [1, 2879] RVT_N RVT-GII GIIM COG3666 Feature: gene Location: 1-147 bp Feature: gene Location: 140-1663 bp Feature: RT Description: RVT_N Location: 194-437 bp Feature: RT Description: RVT_N Location: 194-437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 494-1154 bp Feature: domain Description: GIIM Note: maturase Location: 1217-1451 bp Feature: domain Description: GIIM Note: maturase Location: 1217 -1451 bp Feature: gene Location: 1773-2498 bp Feature: gene Location: 2553-2879 bp Feature: domain Description: COG3666 Location: 2631-2859 bp Feature: domain Description: COG3666 Location: 2631-2859 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG3666 (Transposase )

Seq: QSSQ01000084.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf84, whole genome shotgun sequence (11250 bp)
Overview 1 RT 1: 7569-11167 bp Neighborhood of RT #1 [7569, 11247] Spr RVT-GII Intron_maturas2 Feature: gene Location: 7569-8963 bp Feature: domain Description: Spr Location: 8643-8931 bp Feature: domain Description: Spr Location: 8 643-8 931 bp Feature: gene Location: 9136-9324 bp Feature: gene Location: 9589-11247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9856-10669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98 56-10669 bp Feature: domain Description: Intron_maturas2 Location: 10747-11167 bp Feature: domain Description: Intron_maturas2 Location: 10747-11167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSSQ01000099.1 Hungatella hathewayi strain TF05-11AC TF05-11AC.Scaf99, whole genome shotgun sequence (2676 bp)
Overview 1 RT 1: 96-2659 bp Neighborhood of RT #1 [96, 2659] RVT-GII HNHc Feature: gene Location: 96-1922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 411-1110 bp Feature: domain Description: HNHc Note: nucleases Location: 1659-1800 bp Feature: domain Description: HNHc Note: nucleases Location: 1659 -1800 bp Feature: gene Location: 2507-2659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)