myRT

myRT report for GCA_003437935.1_ASM343793v1

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Seq: QSSR01000001.1 Bacteroides sp. 3_1_33FAA strain TF05-10AC TF05-10AC.Scaf1, whole genome shotgun sequence (974651 bp)
Overview 1 RT 1: 656418-663775 bp Neighborhood of RT #1 [656418, 663819] HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG24 dnaG Feature: gene Location: 656418-656819 bp Feature: domain Description: HTH_17 Location: 656661-656808 bp Feature: domain Description: HTH_1 7 Location: 656661 -656808 bp Feature: gene Location: 656957-658162 bp Feature: domain Description: Arm-DNA-bind_5 Location: 656990-657206 bp Feature: domain Description: Arm-DNA-bind_5 Location: 656990-657206 bp Feature: domain Description: Phage_int_SAM_5 Location: 657344-657572 bp Feature: domain Description: Phage_int_SAM_5 Location: 657344-657572 bp Feature: domain Description: INTN1_C_like Location: 657644-658148 bp Feature: domain Description: INTN1 _C_like Location: 657644-6581 48 bp Feature: gene Location: 658599-662036 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 659109-659574 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 6591 09-659574 bp Feature: gene Location: 662038-662778 bp Feature: gene Location: 662785-663819 bp Feature: domain Description: dnaG Location: 662872-663775 bp Feature: domain Description: dnaG Location: 662872-663775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG24, dnaG (TIGR01391)

Seq: QSSR01000016.1 Bacteroides sp. 3_1_33FAA strain TF05-10AC TF05-10AC.Scaf16, whole genome shotgun sequence (122325 bp)
Overview 1 RT 1: 9340-12937 bp Neighborhood of RT #1 [9340, 12937] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 9340-9711 bp Feature: domain Description: COG2865 Location: 9424-9688 bp Feature: domain Description: COG2 865 Location: 942 4-9688 bp Feature: gene Location: 10012-10230 bp Feature: gene Location: 10349-12010 bp Feature: domain Description: RVT_N Location: 10403-10646 bp Feature: domain Description: RVT_N Location: 10403-10646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10691-11339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10691-11339 bp Feature: domain Description: GIIM Note: maturase Location: 11390-11624 bp Feature: domain Description: GIIM Note: maturase Location: 11390-1162 4 bp Feature: gene Location: 12336-12641 bp Feature: gene Location: 12743-12937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSSR01000002.1 Bacteroides sp. 3_1_33FAA strain TF05-10AC TF05-10AC.Scaf2, whole genome shotgun sequence (332313 bp)
Overview 1 RT 1: 76666-80070 bp Neighborhood of RT #1 [76666, 80070] RVT-UG27 Feature: gene Location: 76666-77313 bp Feature: gene Location: 77327-77995 bp Feature: gene Location: 77988-79250 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 78180-78816 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 78180-78816 bp Feature: gene Location: 79300-79566 bp Feature: gene Location: 79573-80070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSSR01000048.1 Bacteroides sp. 3_1_33FAA strain TF05-10AC TF05-10AC.Scaf48, whole genome shotgun sequence (3628 bp)
Overview 1 RT 1: 3-3617 bp Neighborhood of RT #1 [3, 3625] DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 3-164 bp Feature: gene Location: 278-658 bp Feature: domain Description: DUF3876 Location: 359-623 bp Feature: domain Description: DUF3876 Location: 359-623 bp Feature: gene Location: 919-2742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1183-2005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1183-2005 bp Feature: domain Description: Intron_maturas2 Location: 2179-2422 bp Feature: domain Description: Intron_maturas2 Location: 2179-24 22 bp Feature: domain Description: HNHc Note: nucleases Location: 2533-2704 bp Feature: domain Description: HNHc Note: nucleases Location: 2533-2704 bp Feature: gene Location: 3000-3188 bp Feature: gene Location: 3311-3625 bp Feature: domain Description: Bac_Flav_CT_G Location: 3314-3617 bp Feature: domain Description: Bac_Flav_CT_G Location: 3314 -3617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: QSSR01000056.1 Bacteroides sp. 3_1_33FAA strain TF05-10AC TF05-10AC.Scaf56, whole genome shotgun sequence (2491 bp)
Overview 1 RT 1: 3-2351 bp Neighborhood of RT #1 [3, 2377] RVT-GII matK HNHc Feature: gene Location: 3-140 bp Feature: gene Location: 542-2377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-1658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 836-165 8 bp Feature: domain Description: matK Location: 1832-2048 bp Feature: domain Description: matK Location: 1832-2048 bp Feature: domain Description: HNHc Note: nucleases Location: 2210-2351 bp Feature: domain Description: HNHc Note: nucleases Location: 2210-235 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, matK (CHL00002), HNHc (smart00507)