myRT

myRT report for GCA_003438025.1_ASM343802v1

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Seq: QSSV01000016.1 Bacteroides stercoris strain TF03-6 TF03-6.Scaf16, whole genome shotgun sequence (92305 bp)
Overview 1 RT 1: 2728-7506 bp Neighborhood of RT #1 [2728, 7506] COG3943 RVT-GII Intron_maturas2 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 2728-3093 bp Feature: domain Description: COG3943 Location: 2773-3037 bp Feature: domain Description: COG3943 Location: 2773-3037 bp Feature: gene Location: 3122-3259 bp Feature: gene Location: 3360-5168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3624-4446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3624-4446 bp Feature: domain Description: Intron_maturas2 Location: 4572-4827 bp Feature: domain Description: Intron_maturas2 Location: 4572-4827 bp Feature: gene Location: 5719-6885 bp Feature: domain Description: Phage_int_SAM_5 Location: 6043-6349 bp Feature: domain Description: Phage_int_SAM_5 Location: 6043-6349 bp Feature: domain Description: INTN1_C_like Location: 6403-6868 bp Feature: domain Description: INTN1 _C_like Location: 6403-6868 bp Feature: gene Location: 7348-7506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-GII, Intron_maturas2 (pfam01348), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QSSV01000018.1 Bacteroides stercoris strain TF03-6 TF03-6.Scaf18, whole genome shotgun sequence (79834 bp)
Overview 1 RT 1: 11784-16973 bp 2 RT 2: 22463-27280 bp 3 RT 3: 45381-55301 bp Neighborhood of RT #1 [11784, 16987] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #2 [22463, 27294] YWFCY RVT_N RVT-GII GIIM TraG-D_C Imm17 Neighborhood of RT #3 [45381, 55498] DUF1896 N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C YhcG Feature: gene Location: 11784-12098 bp Feature: domain Description: DUF3876 Location: 11838-12087 bp Feature: domain Description: DUF3876 Location: 11838-12 087 bp Feature: gene Location: 12113-13807 bp Feature: domain Description: Bac_Flav_CT_G Location: 12233-13799 bp Feature: domain Description: Bac_Flav_CT_G Location: 12 2 33-13799 bp Feature: gene Location: 13804-15465 bp Feature: RT Description: RVT_N Location: 13858-14101 bp Feature: RT Description: RVT_N Location: 13858-14101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14146-14794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14146-14794 bp Feature: domain Description: GIIM Note: maturase Location: 14848-15079 bp Feature: domain Description: GIIM Note: maturase Location: 14848-15079 bp Feature: gene Location: 15547-15927 bp Feature: gene Location: 16049-16987 bp Feature: domain Description: Bac_Flav_CT_G Location: 16052-16973 bp Feature: domain Description: Bac_Flav_CT_G Location: 16052 -16973 bp Feature: gene Location: 22463-23185 bp Feature: domain Description: YWFCY Location: 22469-22646 bp Feature: domain Description: YWFCY Location: 2 2 469-2 2 646 bp Feature: gene Location: 23415-23732 bp Feature: gene Location: 23806-25461 bp Feature: RT Description: RVT_N Location: 23860-24103 bp Feature: RT Description: RVT_N Location: 2 3860-2 4103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24148-24793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4148-2 4793 bp Feature: domain Description: GIIM Note: maturase Location: 24844-25078 bp Feature: domain Description: GIIM Note: maturase Location: 2 4844-2 5078 bp Feature: gene Location: 25458-26858 bp Feature: domain Description: TraG-D_C Location: 26232-26565 bp Feature: domain Description: TraG-D_C Location: 2 62 32 -2 6565 bp Feature: gene Location: 27013-27294 bp Feature: domain Description: Imm17 Location: 27103-27280 bp Feature: domain Description: Imm17 Location: 2 7103-2 72 80 bp Feature: gene Location: 45381-45830 bp Feature: domain Description: DUF1896 Location: 45411-45819 bp Feature: domain Description: DUF1896 Location: 45411-45819 bp Feature: gene Location: 45817-49302 bp Feature: domain Description: N6_Mtase Location: 46108-46750 bp Feature: domain Description: N6_Mtase Location: 46108-46750 bp Feature: domain Description: COG4646 Location: 48355-49291 bp Feature: domain Description: COG4646 Location: 48355-492 91 bp Feature: gene Location: 49855-51657 bp Feature: domain Description: matK Location: 49924-50011 bp Feature: domain Description: matK Location: 4992 4-50011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50119-50941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50119-50941 bp Feature: domain Description: Intron_maturas2 Location: 51091-51325 bp Feature: domain Description: Intron_maturas2 Location: 51091-5132 5 bp Feature: gene Location: 51644-54421 bp Feature: domain Description: COG4646 Location: 51758-52895 bp Feature: domain Description: COG4646 Location: 51758-52 895 bp Feature: domain Description: Helicase_C Location: 53093-53312 bp Feature: domain Description: Helicase_C Location: 53093-53312 bp Feature: gene Location: 54485-55498 bp Feature: domain Description: YhcG Location: 54818-55301 bp Feature: domain Description: YhcG Location: 54818-55301 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293), TraG-D_C (pfam12696), Imm17 (pfam15562), DUF1896 (pfam08989), N6_Mtase (pfam02384)
COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), Intron_maturas2 (pfam01348), Helicase_C (pfam00271), YhcG (COG4804)

Seq: QSSV01000032.1 Bacteroides stercoris strain TF03-6 TF03-6.Scaf32, whole genome shotgun sequence (34057 bp)
Overview 1 RT 1: 28471-33527 bp Neighborhood of RT #1 [28471, 33527] DUF3875 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Feature: gene Location: 28471-28641 bp Feature: domain Description: DUF3875 Location: 28489-28636 bp Feature: domain Description: DUF3 875 Location: 28489-2863 6 bp Feature: gene Location: 28660-30495 bp Feature: domain Description: Bac_Flav_CT_G Location: 28663-30493 bp Feature: domain Description: Bac_Flav_CT_G Location: 28663 -3 0493 bp Feature: gene Location: 31126-32772 bp Feature: RT Description: RVT_N Location: 31180-31423 bp Feature: RT Description: RVT_N Location: 3 1180-3 1423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31468-32113 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1468-3 2113 bp Feature: domain Description: GIIM Note: maturase Location: 32167-32398 bp Feature: domain Description: GIIM Note: maturase Location: 3 2167-3 23 98 bp Feature: gene Location: 32781-33389 bp Feature: domain Description: Bac_Flav_CT_G Location: 32898-33357 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 2898-3 3 3 57 bp Feature: gene Location: 33396-33527 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3875 (pfam12991), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSSV01000054.1 Bacteroides stercoris strain TF03-6 TF03-6.Scaf54, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 563-2027 bp Neighborhood of RT #1 [563, 2371] RVT-GII Intron_maturas2 Feature: gene Location: 563-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-164 9 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSSV01000055.1 Bacteroides stercoris strain TF03-6 TF03-6.Scaf55, whole genome shotgun sequence (2484 bp)
Overview 1 RT 1: 2-2344 bp Neighborhood of RT #1 [2, 2370] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 2-133 bp Feature: gene Location: 535-2370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-165 1 bp Feature: domain Description: Intron_maturas2 Location: 1810-2179 bp Feature: domain Description: Intron_maturas2 Location: 1810-2179 bp Feature: domain Description: HNHc Note: nucleases Location: 2203-2344 bp Feature: domain Description: HNHc Note: nucleases Location: 2203-2344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)