myRT

myRT report for GCA_003438135.1_ASM343813v1

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Seq: QSTF01000010.1 Bacteroides plebeius strain OM08-14 OM08-14.Scaf10, whole genome shotgun sequence (90896 bp)
Overview 1 RT 1: 67842-74883 bp Neighborhood of RT #1 [67842, 74927] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG24 dnaG Feature: gene Location: 67842-68042 bp Feature: gene Location: 68064-69269 bp Feature: domain Description: Arm-DNA-bind_5 Location: 68097-68313 bp Feature: domain Description: Arm-DNA-bind_5 Location: 68097-6831 3 bp Feature: domain Description: Phage_int_SAM_5 Location: 68451-68685 bp Feature: domain Description: Phage_int_SAM_5 Location: 68451 -68685 bp Feature: domain Description: INTN1_C_like Location: 68751-69255 bp Feature: domain Description: INTN1 _C_like Location: 68751 -69255 bp Feature: gene Location: 69707-73144 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 70217-70682 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 7021 7-70682 bp Feature: gene Location: 73146-73886 bp Feature: gene Location: 73893-74927 bp Feature: domain Description: dnaG Location: 73980-74883 bp Feature: domain Description: dnaG Location: 73980-74883 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG24, dnaG (TIGR01391)

Seq: QSTF01000011.1 Bacteroides plebeius strain OM08-14 OM08-14.Scaf11, whole genome shotgun sequence (86333 bp)
Overview 1 RT 1: 84097-85817 bp Neighborhood of RT #1 [84097, 86308] RVT-DGRs Feature: gene Location: 84097-84339 bp Feature: gene Location: 84525-84974 bp Feature: gene Location: 85007-86308 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85220-85817 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 852 2 0-85817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSTF01000111.1 Bacteroides plebeius strain OM08-14 OM08-14.Scaf111, whole genome shotgun sequence (2466 bp)
Overview 1 RT 1: 119-2082 bp Neighborhood of RT #1 [119, 2082] RVT_N RVT-GII GIIM Feature: gene Location: 119-1786 bp Feature: domain Description: RVT_N Location: 173-416 bp Feature: domain Description: RVT_N Location: 173 -416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 461-1109 bp Feature: domain Description: GIIM Note: maturase Location: 1163-1394 bp Feature: domain Description: GIIM Note: maturase Location: 1163 -13 94 bp Feature: gene Location: 1768-2082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSTF01000058.1 Bacteroides plebeius strain OM08-14 OM08-14.Scaf58, whole genome shotgun sequence (26376 bp)
Overview 1 RT 1: 52-3930 bp Neighborhood of RT #1 [52, 4277] RVT-GII Intron_maturas2 Toprim_2 Mob_Pre CENP-F_leu_zip Feature: gene Location: 52-1860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-1138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-1138 bp Feature: domain Description: Intron_maturas2 Location: 1207-1516 bp Feature: domain Description: Intron_maturas2 Location: 1207-1516 bp Feature: gene Location: 1832-2770 bp Feature: domain Description: Toprim_2 Location: 2384-2663 bp Feature: domain Description: Toprim_2 Location: 2384 -2663 bp Feature: gene Location: 3009-4277 bp Feature: domain Description: Mob_Pre Location: 3075-3621 bp Feature: domain Description: Mob_Pre Location: 3075-3621 bp Feature: domain Description: CENP-F_leu_zip Location: 3807-3930 bp Feature: domain Description: CENP-F_leu_zip Location: 3807-3930 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), Mob_Pre (pfam01076), CENP-F_leu_zip (pfam10473)

Seq: QSTF01000006.1 Bacteroides plebeius strain OM08-14 OM08-14.Scaf6, whole genome shotgun sequence (108728 bp)
Overview 1 RT 1: 12734-17926 bp Neighborhood of RT #1 [12734, 17937] Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 12734-13672 bp Feature: domain Description: Bac_Flav_CT_G Location: 12737-13658 bp Feature: domain Description: Bac_Flav_CT_G Location: 12737-1365 8 bp Feature: gene Location: 13851-14000 bp Feature: gene Location: 14256-15917 bp Feature: domain Description: RVT_N Location: 14310-14553 bp Feature: domain Description: RVT_N Location: 14310-145 5 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14598-15246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 145 98-15 246 bp Feature: domain Description: GIIM Note: maturase Location: 15300-15531 bp Feature: domain Description: GIIM Note: maturase Location: 15 300-15 5 31 bp Feature: gene Location: 15914-17608 bp Feature: domain Description: Bac_Flav_CT_G Location: 16034-17600 bp Feature: domain Description: Bac_Flav_CT_G Location: 16034-17600 bp Feature: gene Location: 17623-17937 bp Feature: domain Description: DUF3876 Location: 17677-17926 bp Feature: domain Description: DUF3876 Location: 17677-17926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QSTF01000007.1 Bacteroides plebeius strain OM08-14 OM08-14.Scaf7, whole genome shotgun sequence (103394 bp)
Overview 1 RT 1: 23604-31166 bp Neighborhood of RT #1 [23604, 33877] RVT-DGRs pfam08757 Feature: gene Location: 23604-23909 bp Feature: gene Location: 24074-24553 bp Feature: gene Location: 24555-25841 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24747-25344 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24747-25344 bp Feature: gene Location: 25871-26164 bp Feature: gene Location: 26249-33877 bp Feature: domain Description: pfam08757 Location: 30680-31166 bp Feature: domain Description: pfam08757 Location: 306 80-3116 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, pfam08757 (CotH;CotH kinase protein)