myRT

myRT report for GCA_003438585.1_ASM343858v1

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Seq: QSSX01000135.1 [Ruminococcus] gnavus strain TF01-20-2 TF01-20-2.Scaf135, whole genome shotgun sequence (2747 bp)
Overview 1 RT 1: 135-2044 bp Neighborhood of RT #1 [135, 2044] RVT-GII Feature: gene Location: 135-1529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144-693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 44-693 bp Feature: gene Location: 1533-1688 bp Feature: gene Location: 1778-2044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSSX01000145.1 [Ruminococcus] gnavus strain TF01-20-2 TF01-20-2.Scaf145, whole genome shotgun sequence (2358 bp)
Overview 1 RT 1: 1-1887 bp Neighborhood of RT #1 [1, 2273] RVT_N RVT-GII YkfC Feature: gene Location: 1-213 bp Feature: gene Location: 603-2273 bp Feature: domain Description: RVT_N Location: 648-891 bp Feature: domain Description: RVT_N Location: 648-891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 936-1584 bp Feature: domain Description: YkfC Location: 1692-1887 bp Feature: domain Description: YkfC Location: 1692 -1887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344)

Seq: QSSX01000004.1 [Ruminococcus] gnavus strain TF01-20-2 TF01-20-2.Scaf4, whole genome shotgun sequence (115506 bp)
Overview 1 RT 1: 32838-37714 bp Neighborhood of RT #1 [32838, 37755] Tail_P2_I pfam12571 RVT-DGRs Phage_XkdX Feature: gene Location: 32838-33743 bp Feature: domain Description: Tail_P2_I Location: 32919-33294 bp Feature: domain Description: Tail_P2_I Location: 3 2919-3 3 294 bp Feature: gene Location: 33748-35694 bp Feature: domain Description: pfam12571 Location: 33772-34225 bp Feature: domain Description: pfam12571 Location: 3 3 772-3 4225 bp Feature: gene Location: 36092-37255 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36362-37001 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 63 62-3 7001 bp Feature: gene Location: 37215-37601 bp Feature: gene Location: 37603-37755 bp Feature: domain Description: Phage_XkdX Location: 37609-37714 bp Feature: domain Description: Phage_XkdX Location: 3 7609-3 7714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tail_P2_I (pfam09684), pfam12571 (DUF3751;Phage tail-collar fibre protein), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: QSSX01000058.1 [Ruminococcus] gnavus strain TF01-20-2 TF01-20-2.Scaf58, whole genome shotgun sequence (15770 bp)
Overview 1 RT 1: 2-2604 bp Neighborhood of RT #1 [2, 2604] RVT-GII Feature: gene Location: 2-235 bp Feature: gene Location: 382-2058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 63-1189 bp Feature: gene Location: 2073-2294 bp Feature: gene Location: 2458-2604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QSSX01000087.1 [Ruminococcus] gnavus strain TF01-20-2 TF01-20-2.Scaf87, whole genome shotgun sequence (8908 bp)
Overview 1 RT 1: 2597-8439 bp Neighborhood of RT #1 [2597, 8447] ebgA ebgA RVT-GII GIIM DUF4300 PRK10572 Feature: gene Location: 2597-5092 bp Feature: domain Description: ebgA Location: 2603-5024 bp Feature: domain Description: ebgA Location: 2603-5 024 bp Feature: gene Location: 5104-5589 bp Feature: domain Description: ebgA Location: 5122-5569 bp Feature: domain Description: ebgA Location: 5 122-5 5 69 bp Feature: gene Location: 5810-6442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5816-5957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 816-5 95 7 bp Feature: domain Description: GIIM Note: maturase Location: 6011-6227 bp Feature: domain Description: GIIM Note: maturase Location: 6011-6227 bp Feature: gene Location: 6589-7434 bp Feature: domain Description: DUF4300 Location: 6685-7429 bp Feature: domain Description: DUF4300 Location: 6685 -7429 bp Feature: gene Location: 7596-8447 bp Feature: domain Description: PRK10572 Location: 7722-8439 bp Feature: domain Description: PRK105 72 Location: 7722-8439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ebgA (PRK10340), RVT-GII, GIIM (pfam08388), DUF4300 (pfam14133), PRK10572 (arabinose operon transcriptional regulator AraC)