myRT

myRT report for GCA_003438645.1_ASM343864v1

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Seq: QSTG01000114.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf114, whole genome shotgun sequence (4428 bp)
Overview 1 RT 1: 2-4425 bp Neighborhood of RT #1 [2, 4425] RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 2-205 bp Feature: gene Location: 1691-2614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1700-1892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 700-1 892 bp Feature: domain Description: Intron_maturas2 Location: 1961-2270 bp Feature: domain Description: Intron_maturas2 Location: 1 961 -2270 bp Feature: gene Location: 2586-3515 bp Feature: domain Description: Toprim_2 Location: 3138-3426 bp Feature: domain Description: Toprim_2 Location: 31 38-3426 bp Feature: gene Location: 3964-4425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSTG01000130.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf130, whole genome shotgun sequence (2419 bp)
Overview 1 RT 1: 122-1397 bp Neighborhood of RT #1 [122, 1774] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: RT Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSTG01000002.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf2, whole genome shotgun sequence (231850 bp)
Overview 1 RT 1: 157740-161119 bp Neighborhood of RT #1 [157740, 161119] RVT-DGRs Feature: gene Location: 157740-158324 bp Feature: gene Location: 158272-158502 bp Feature: gene Location: 158468-159283 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 158801-159128 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 158801-159128 bp Feature: gene Location: 159567-159770 bp Feature: gene Location: 159800-161119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSTG01000034.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf34, whole genome shotgun sequence (58501 bp)
Overview 1 RT 1: 1967-6080 bp Neighborhood of RT #1 [1967, 6091] DUF4141 RVT-GII matK HNHc Bac_Flav_CT_J Feature: gene Location: 1967-2191 bp Feature: domain Description: DUF4141 Location: 1979-2132 bp Feature: domain Description: DUF4 14 1 Location: 1979-2132 bp Feature: gene Location: 2231-2392 bp Feature: gene Location: 2712-4547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006-3828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3006-3828 bp Feature: domain Description: matK Location: 4005-4218 bp Feature: domain Description: matK Location: 4 005-4 218 bp Feature: domain Description: HNHc Note: nucleases Location: 4380-4521 bp Feature: domain Description: HNHc Note: nucleases Location: 4 380-4 521 bp Feature: gene Location: 4540-5076 bp Feature: gene Location: 5090-6091 bp Feature: domain Description: Bac_Flav_CT_J Location: 5117-6080 bp Feature: domain Description: Bac_Flav_CT_J Location: 5117-6080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, matK (CHL00002), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QSTG01000047.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf47, whole genome shotgun sequence (40193 bp)
Overview 1 RT 1: 2-8553 bp Neighborhood of RT #1 [2, 8567] RVT_N RVT-GII GIIM MPP_MS158 DUF4134 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 2-187 bp Feature: gene Location: 1205-2851 bp Feature: RT Description: RVT_N Location: 1259-1502 bp Feature: RT Description: RVT_N Location: 125 9-15 02 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1547-2192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 47-2192 bp Feature: domain Description: GIIM Note: maturase Location: 2246-2477 bp Feature: domain Description: GIIM Note: maturase Location: 2246-2477 bp Feature: gene Location: 3085-3846 bp Feature: domain Description: MPP_MS158 Location: 3094-3793 bp Feature: domain Description: MPP_MS15 8 Location: 3094-3793 bp Feature: gene Location: 3843-4628 bp Feature: gene Location: 6000-6473 bp Feature: gene Location: 6454-6720 bp Feature: domain Description: DUF4134 Location: 6505-6703 bp Feature: domain Description: DUF4134 Location: 65 05 -6703 bp Feature: gene Location: 6762-7685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6771-6963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6771-6963 bp Feature: domain Description: Intron_maturas2 Location: 7032-7344 bp Feature: domain Description: Intron_maturas2 Location: 7032-7344 bp Feature: gene Location: 7657-8028 bp Feature: gene Location: 8157-8567 bp Feature: domain Description: Toprim_2 Location: 8268-8553 bp Feature: domain Description: Toprim_2 Location: 8268-85 5 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4134 (pfam13572), Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QSTG01000005.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf5, whole genome shotgun sequence (176147 bp)
Overview 1 RT 1: 49936-55258 bp Neighborhood of RT #1 [49936, 59379] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 49936-50178 bp Feature: gene Location: 50358-50843 bp Feature: gene Location: 50840-52144 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51053-51647 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 51053-516 47 bp Feature: gene Location: 52246-52464 bp Feature: gene Location: 52660-59379 bp Feature: domain Description: Laminin_G_3 Location: 54103-54181 bp Feature: domain Description: Laminin_G_3 Location: 54103-54181 bp Feature: domain Description: Laminin_G_3 Location: 54832-55258 bp Feature: domain Description: Laminin_G_3 Location: 54832-55258 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: QSTG01000058.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf58, whole genome shotgun sequence (25116 bp)
Overview 1 RT 1: 19021-23308 bp Neighborhood of RT #1 [19021, 25113] XerC RVT-DGRs LRR_AMN1 Feature: gene Location: 19021-20187 bp Feature: domain Description: XerC Location: 19324-20131 bp Feature: domain Description: XerC Location: 19324-20131 bp Feature: gene Location: 20228-20722 bp Feature: gene Location: 20724-22079 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21000-21591 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21000-21591 bp Feature: gene Location: 22453-25113 bp Feature: domain Description: LRR_AMN1 Location: 22915-23308 bp Feature: domain Description: LRR_AMN1 Location: 22915-23308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), RVT-DGRs, LRR_AMN1 (sd00034)

Seq: QSTG01000006.1 Bacteroides vulgatus strain OM08-13BH OM08-13BH.Scaf6, whole genome shotgun sequence (155260 bp)
Overview 1 RT 1: 3877-12832 bp Neighborhood of RT #1 [3877, 13449] KAP_NTPase KAP_NTPase RVT_N RVT-GII GIIM PRK06917 N6_Mtase COG4646 Feature: gene Location: 3877-5766 bp Feature: domain Description: KAP_NTPase Location: 3925-4012 bp Feature: domain Description: KAP_NTPase Location: 3925-4012 bp Feature: domain Description: KAP_NTPase Location: 4285-4561 bp Feature: domain Description: KAP_NTPase Location: 428 5-4561 bp Feature: gene Location: 6007-7134 bp Feature: gene Location: 7088-8755 bp Feature: RT Description: RVT_N Location: 7142-7385 bp Feature: RT Description: RVT_N Location: 7142-738 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7430-8078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7430-8 078 bp Feature: domain Description: GIIM Note: maturase Location: 8132-8363 bp Feature: domain Description: GIIM Note: maturase Location: 8 132-8 363 bp Feature: gene Location: 8770-9051 bp Feature: gene Location: 9412-13449 bp Feature: domain Description: PRK06917 Location: 9451-9670 bp Feature: domain Description: PRK06917 Location: 9451-9670 bp Feature: domain Description: N6_Mtase Location: 9904-10327 bp Feature: domain Description: N6_Mtase Location: 9904-10327 bp Feature: domain Description: COG4646 Location: 11104-12832 bp Feature: domain Description: COG4646 Location: 11104-128 32 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KAP_NTPase (pfam07693), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK06917 (aspartate aminotransferase family protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )