myRT

myRT report for GCA_003438895.1_ASM343889v1

Download annotations/find similar RTs

Seq: QSUD01000002.1 Bacteroides fragilis strain OM06-1 OM06-1.Scaf2, whole genome shotgun sequence (1123747 bp)
Overview 1 RT 1: 119626-124220 bp Neighborhood of RT #1 [119626, 124336] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 119626-119754 bp Feature: gene Location: 120405-120695 bp Feature: domain Description: Cas2_I_II_III Location: 120432-120642 bp Feature: domain Description: Cas2_I_II_III Location: 1 20432-1 20642 bp Feature: gene Location: 120689-122959 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 120896-121502 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 20896-1 21 502 bp Feature: domain Description: Cas1_I-II-III Location: 121961-122918 bp Feature: domain Description: Cas1 _I-II-III Location: 1 21 961 -1 2291 8 bp Feature: gene Location: 122979-123923 bp Feature: domain Description: Cmr6_III-B Location: 123135-123912 bp Feature: domain Description: Cmr6_III-B Location: 1 231 35-1 2391 2 bp Feature: gene Location: 123926-124336 bp Feature: domain Description: Cas_Cmr5 Location: 123974-124220 bp Feature: domain Description: Cas_Cmr5 Location: 1 23974-1 24220 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: QSUD01000005.1 Bacteroides fragilis strain OM06-1 OM06-1.Scaf5, whole genome shotgun sequence (424933 bp)
Overview 1 RT 1: 303014-304436 bp Neighborhood of RT #1 [303014, 304436] HTH_28 RVT-GII Feature: gene Location: 303014-303148 bp Feature: gene Location: 303223-303513 bp Feature: domain Description: HTH_28 Location: 303247-303394 bp Feature: domain Description: HTH_2 8 Location: 3032 47-303394 bp Feature: gene Location: 303634-303831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303637-303829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303637-30382 9 bp Feature: gene Location: 303861-304070 bp Feature: gene Location: 304074-304436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: QSUD01000009.1 Bacteroides fragilis strain OM06-1 OM06-1.Scaf9, whole genome shotgun sequence (171853 bp)
Overview 1 RT 1: 103041-111999 bp Neighborhood of RT #1 [103041, 112007] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 103041-105230 bp Feature: domain Description: GlnA3 Location: 103116-105228 bp Feature: domain Description: GlnA3 Location: 103 116-105228 bp Feature: gene Location: 105470-107689 bp Feature: gene Location: 107896-109008 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108211-108760 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 108211-108760 bp Feature: gene Location: 109150-110943 bp Feature: domain Description: rpsA Location: 109228-110836 bp Feature: domain Description: rpsA Location: 109228-11083 6 bp Feature: gene Location: 111093-112007 bp Feature: domain Description: RNase_Z Location: 111108-111999 bp Feature: domain Description: RNase_Z Location: 111108-111999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)