myRT

myRT report for GCA_003439045.1_ASM343904v1

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Seq: QSUQ01000017.1 Bacteroides fragilis strain OM05-11 OM05-11.Scaf17, whole genome shotgun sequence (85942 bp)
Overview 1 RT 1: 22596-26137 bp Neighborhood of RT #1 [22596, 26241] RVT-Retrons rpsA rpsA Feature: gene Location: 22596-22982 bp Feature: gene Location: 22997-23149 bp Feature: gene Location: 23192-24307 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23507-24059 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23507-24059 bp Feature: gene Location: 24449-25423 bp Feature: domain Description: rpsA Location: 24527-25418 bp Feature: domain Description: rpsA Location: 24527-2541 8 bp Feature: gene Location: 25438-26241 bp Feature: domain Description: rpsA Location: 25441-26137 bp Feature: domain Description: rpsA Location: 25441 -261 37 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rpsA (TIGR00717)

Seq: QSUQ01000022.1 Bacteroides fragilis strain OM05-11 OM05-11.Scaf22, whole genome shotgun sequence (68477 bp)
Overview 1 RT 1: 53778-60086 bp Neighborhood of RT #1 [53778, 60086] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 53778-54983 bp Feature: domain Description: Relaxase Location: 53961-54285 bp Feature: domain Description: Relaxase Location: 53961-542 85 bp Feature: gene Location: 55054-55980 bp Feature: domain Description: YWFCY Location: 55063-55240 bp Feature: domain Description: YWFCY Location: 55063-552 40 bp Feature: gene Location: 56617-58269 bp Feature: domain Description: RVT_N Location: 56671-56914 bp Feature: domain Description: RVT_N Location: 56671-56914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56959-57607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56959-57607 bp Feature: domain Description: GIIM Note: maturase Location: 57661-57892 bp Feature: domain Description: GIIM Note: maturase Location: 57661-57892 bp Feature: gene Location: 58274-59479 bp Feature: domain Description: TraG-D_C Location: 58856-59186 bp Feature: domain Description: TraG-D_C Location: 58856-59186 bp Feature: gene Location: 59520-60086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QSUQ01000095.1 Bacteroides fragilis strain OM05-11 OM05-11.Scaf95, whole genome shotgun sequence (8135 bp)
Overview 1 RT 1: 4034-7638 bp Neighborhood of RT #1 [4034, 7679] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Feature: gene Location: 4034-4288 bp Feature: domain Description: Cas_Cmr5 Location: 4082-4241 bp Feature: domain Description: Cas_Cmr5 Location: 4082-4241 bp Feature: gene Location: 4667-5389 bp Feature: domain Description: Cmr6_III-B Location: 4673-5378 bp Feature: domain Description: Cmr6_III-B Location: 4673 -53 78 bp Feature: gene Location: 5409-7679 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5616-6222 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 5616-6222 bp Feature: domain Description: Cas1_I-II-III Location: 6681-7638 bp Feature: domain Description: Cas1_I-II-III Location: 6681-763 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)