myRT

myRT report for GCA_003439055.1_ASM343905v1

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Seq: QSUR01000011.1 Bacteroides sp. OM05-10AA OM05-10AA.Scaf11, whole genome shotgun sequence (183212 bp)
Overview 1 RT 1: 58381-64887 bp Neighborhood of RT #1 [58381, 65093] RnlB_antitoxin RnlA_toxin RVT_N RVT-GII GIIM PRK07726 Feature: gene Location: 58381-58767 bp Feature: domain Description: RnlB_antitoxin Location: 58426-58699 bp Feature: domain Description: RnlB_antitoxin Location: 58426-58699 bp Feature: gene Location: 58772-59821 bp Feature: domain Description: RnlA_toxin Location: 59048-59720 bp Feature: domain Description: RnlA_toxin Location: 59048-59720 bp Feature: gene Location: 60761-62434 bp Feature: RT Description: RVT_N Location: 60815-61058 bp Feature: RT Description: RVT_N Location: 6081 5-61 058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61103-61751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 03-61 751 bp Feature: domain Description: GIIM Note: maturase Location: 61805-62036 bp Feature: domain Description: GIIM Note: maturase Location: 61 805-62036 bp Feature: gene Location: 62539-62994 bp Feature: gene Location: 62991-65093 bp Feature: domain Description: PRK07726 Location: 63006-64887 bp Feature: domain Description: PRK07726 Location: 63006-64887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RnlB_antitoxin (pfam15933), RnlA_toxin (pfam15935), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK07726 (DNA topoisomerase 3)

Seq: QSUR01000012.1 Bacteroides sp. OM05-10AA OM05-10AA.Scaf12, whole genome shotgun sequence (175332 bp)
Overview 1 RT 1: 22491-29376 bp Neighborhood of RT #1 [22491, 29376] AAA_25 RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 22491-24038 bp Feature: domain Description: AAA_25 Location: 23106-23568 bp Feature: domain Description: AAA_2 5 Location: 2 3106-2 3568 bp Feature: gene Location: 24250-24432 bp Feature: gene Location: 24981-26789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25245-26067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 45-2 6067 bp Feature: domain Description: Intron_maturas2 Location: 26136-26445 bp Feature: domain Description: Intron_maturas2 Location: 2 6136-2 6445 bp Feature: gene Location: 26761-27690 bp Feature: domain Description: Toprim_2 Location: 27313-27601 bp Feature: domain Description: Toprim_2 Location: 2 7313-2 7601 bp Feature: gene Location: 27973-29376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QSUR01000014.1 Bacteroides sp. OM05-10AA OM05-10AA.Scaf14, whole genome shotgun sequence (156379 bp)
Overview 1 RT 1: 7034-16489 bp Neighborhood of RT #1 [7034, 16512] CarboxypepD_reg Plug TonB_dep_Rec PAS_3 BaeS RVT-GII GIIM RVT_N RVT-GII ruvA DUF3843 DUF3843 Feature: gene Location: 7034-10207 bp Feature: domain Description: CarboxypepD_reg Location: 7118-7361 bp Feature: domain Description: CarboxypepD_reg Location: 7118-73 61 bp Feature: domain Description: Plug Location: 7433-7742 bp Feature: domain Description: Plug Location: 743 3 -7742 bp Feature: domain Description: TonB_dep_Rec Location: 8249-9824 bp Feature: domain Description: TonB_dep_Rec Location: 8249-9824 bp Feature: gene Location: 10270-12654 bp Feature: domain Description: PAS_3 Location: 11680-11905 bp Feature: domain Description: PAS_3 Location: 11680-11905 bp Feature: domain Description: BaeS Location: 11911-12649 bp Feature: domain Description: BaeS Location: 11911-12649 bp Feature: gene Location: 12673-13428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12703-12883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12703 -12883 bp Feature: domain Description: GIIM Note: maturase Location: 12937-13171 bp Feature: domain Description: GIIM Note: maturase Location: 1293 7-13 171 bp Feature: gene Location: 13443-14219 bp Feature: RT Description: RVT_N Location: 13512-13755 bp Feature: RT Description: RVT_N Location: 13 512-13 755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13800-14127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 800-14127 bp Feature: gene Location: 14916-15518 bp Feature: domain Description: ruvA Location: 14919-15516 bp Feature: domain Description: ruvA Location: 14919-15516 bp Feature: gene Location: 15520-16512 bp Feature: domain Description: DUF3843 Location: 15535-16003 bp Feature: domain Description: DUF3 843 Location: 1553 5-16003 bp Feature: domain Description: DUF3843 Location: 16078-16489 bp Feature: domain Description: DUF3 843 Location: 16078-16489 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_3 (pfam08447), BaeS (COG0642), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), ruvA (TIGR00084), CarboxypepD_reg (pfam13620), Plug (pfam07715), TonB_dep_Rec (pfam00593), DUF3843 (pfam12954)

Seq: QSUR01000016.1 Bacteroides sp. OM05-10AA OM05-10AA.Scaf16, whole genome shotgun sequence (139063 bp)
Overview 1 RT 1: 61176-64216 bp Neighborhood of RT #1 [61176, 64251] RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 61176-61376 bp Feature: gene Location: 61452-61586 bp Feature: gene Location: 61600-63276 bp Feature: RT Description: RVT_N Location: 61654-61897 bp Feature: RT Description: RVT_N Location: 61654 -61897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61942-62587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6194 2-62587 bp Feature: domain Description: GIIM Note: maturase Location: 62641-62872 bp Feature: domain Description: GIIM Note: maturase Location: 6264 1-62872 bp Feature: gene Location: 63254-63865 bp Feature: domain Description: Bac_Flav_CT_G Location: 63371-63830 bp Feature: domain Description: Bac_Flav_CT_G Location: 63371-63830 bp Feature: gene Location: 63871-64251 bp Feature: domain Description: DUF3876 Location: 63943-64216 bp Feature: domain Description: DUF3876 Location: 6394 3-64 216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), DUF3876 (pfam12992)

Seq: QSUR01000003.1 Bacteroides sp. OM05-10AA OM05-10AA.Scaf3, whole genome shotgun sequence (346300 bp)
Overview 1 RT 1: 342548-346071 bp Neighborhood of RT #1 [342548, 346232] PLPDE_III_DapDC Nonheme_Ferritin RVT-GII GIIM Feature: gene Location: 342548-343708 bp Feature: domain Description: PLPDE_III_DapDC Location: 342590-343682 bp Feature: domain Description: PLPDE_III_DapDC Location: 3425 90-343682 bp Feature: gene Location: 343802-344329 bp Feature: domain Description: Nonheme_Ferritin Location: 343859-344318 bp Feature: domain Description: Nonheme_Ferritin Location: 34385 9-344318 bp Feature: gene Location: 344826-346232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345168-345786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 345 168-345 786 bp Feature: domain Description: GIIM Note: maturase Location: 345843-346071 bp Feature: domain Description: GIIM Note: maturase Location: 345 843-346071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PLPDE_III_DapDC (cd06828), Nonheme_Ferritin (cd01055), RVT-GII, GIIM (pfam08388)

Seq: QSUR01000009.1 Bacteroides sp. OM05-10AA OM05-10AA.Scaf9, whole genome shotgun sequence (198033 bp)
Overview 1 RT 1: 58254-70522 bp Neighborhood of RT #1 [58254, 70647] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 58254-60056 bp Feature: domain Description: rpsA Location: 58323-59940 bp Feature: domain Description: rpsA Location: 58323-59940 bp Feature: gene Location: 60153-66110 bp Feature: domain Description: DUF4011 Location: 61383-61896 bp Feature: domain Description: DUF4011 Location: 6 1383-6 1896 bp Feature: domain Description: DEXXQc_SF1 Location: 62235-63096 bp Feature: domain Description: DEXXQc_SF1 Location: 6 2235-6 3096 bp Feature: domain Description: DEXXQc_SF1 Location: 63663-64422 bp Feature: domain Description: DEXXQc_SF1 Location: 6 36 6 3-6 4422 bp Feature: domain Description: TIGR00376 Location: 64554-64941 bp Feature: domain Description: TIGR00376 Location: 6 4554-6 4941 bp Feature: domain Description: MTES_1575 Location: 65094-65379 bp Feature: domain Description: MTES_1575 Location: 6 5094-6 5379 bp Feature: domain Description: DUF3320 Location: 65619-65760 bp Feature: domain Description: DUF3320 Location: 6 56 19-6 576 0 bp Feature: gene Location: 66112-67242 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 66433-66976 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6 6 433-6 6 976 bp Feature: gene Location: 67447-69654 bp Feature: gene Location: 69823-70647 bp Feature: domain Description: PDDEXK_2 Location: 69844-70522 bp Feature: domain Description: PDDEXK_2 Location: 6 9844-70522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)