myRT

myRT report for GCA_003439065.1_ASM343906v1

Download annotations/find similar RTs

Seq: QSUS01000001.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf1, whole genome shotgun sequence (860544 bp)
Overview 1 RT 1: 97352-103876 bp 2 RT 2: 374210-379038 bp Neighborhood of RT #1 [97352, 103884] RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [374210, 379038] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 97352-99592 bp Feature: gene Location: 99607-99753 bp Feature: gene Location: 99796-100911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100111-100663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 001 1 1 -1 00663 bp Feature: gene Location: 101053-102846 bp Feature: domain Description: rpsA Location: 101131-102739 bp Feature: domain Description: rpsA Location: 1 01 1 31 -1 02739 bp Feature: gene Location: 102970-103884 bp Feature: domain Description: RNase_Z Location: 102985-103876 bp Feature: domain Description: RNase_Z Location: 1 02985-1 03876 bp Feature: gene Location: 374210-375613 bp Feature: gene Location: 375896-376825 bp Feature: domain Description: Toprim_2 Location: 376448-376736 bp Feature: domain Description: Toprim_2 Location: 376448-376736 bp Feature: gene Location: 376797-378605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377061-377883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 377061 -377883 bp Feature: domain Description: Intron_maturas2 Location: 377952-378261 bp Feature: domain Description: Intron_maturas2 Location: 377952-378261 bp Feature: gene Location: 378607-378789 bp Feature: gene Location: 378895-379038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), RNase_Z (TIGR02651), RVT-Retrons, Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSUS01000022.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf22, whole genome shotgun sequence (68777 bp)
Overview 1 RT 1: 2-2595 bp Neighborhood of RT #1 [2, 2595] RVT-CRISPR-like Feature: gene Location: 2-145 bp Feature: gene Location: 215-1489 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 422-1064 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 42 2 -1064 bp Feature: gene Location: 1732-2070 bp Feature: gene Location: 2404-2595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: QSUS01000024.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf24, whole genome shotgun sequence (44818 bp)
Overview 1 RT 1: 22390-27305 bp Neighborhood of RT #1 [22390, 27766] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4141 Feature: gene Location: 22390-24219 bp Feature: domain Description: Bac_Flav_CT_G Location: 22393-24205 bp Feature: domain Description: Bac_Flav_CT_G Location: 223 93 -24205 bp Feature: gene Location: 24247-24420 bp Feature: gene Location: 24766-26577 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25030-25852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2503 0-25852 bp Feature: domain Description: Intron_maturas2 Location: 25927-26242 bp Feature: domain Description: Intron_maturas2 Location: 25927-26242 bp Feature: domain Description: HNHc Note: nucleases Location: 26398-26548 bp Feature: domain Description: HNHc Note: nucleases Location: 263 98-26548 bp Feature: gene Location: 26634-26933 bp Feature: domain Description: Bac_Flav_CT_G Location: 26667-26931 bp Feature: domain Description: Bac_Flav_CT_G Location: 26667-2693 1 bp Feature: gene Location: 27134-27766 bp Feature: domain Description: DUF4141 Location: 27164-27305 bp Feature: domain Description: DUF4141 Location: 27164-273 05 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4141 (pfam13605)

Seq: QSUS01000028.1 Bacteroides fragilis strain OM04-9BH OM04-9BH.Scaf28, whole genome shotgun sequence (13495 bp)
Overview 1 RT 1: 8411-9833 bp Neighborhood of RT #1 [8411, 9833] RVT-GII HTH_28 Feature: gene Location: 8411-8773 bp Feature: gene Location: 8777-8986 bp Feature: gene Location: 9016-9213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9019-9211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9019-9211 bp Feature: gene Location: 9334-9624 bp Feature: domain Description: HTH_28 Location: 9358-9505 bp Feature: domain Description: HTH_28 Location: 9358-9505 bp Feature: gene Location: 9699-9833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518)