myRT

myRT report for GCA_003439225.1_ASM343922v1

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Seq: QSVA01000018.1 Bacteroides uniformis strain OM03-4 OM03-4.Scaf18, whole genome shotgun sequence (94352 bp)
Overview 1 RT 1: 26306-30135 bp Neighborhood of RT #1 [26306, 30135] TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 26306-26674 bp Feature: gene Location: 26784-28013 bp Feature: domain Description: TraG-D_C Location: 27363-27699 bp Feature: domain Description: TraG-D_C Location: 27363-27699 bp Feature: gene Location: 28018-29670 bp Feature: domain Description: RVT_N Location: 28072-28315 bp Feature: domain Description: RVT_N Location: 28072-2831 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28360-29008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28360-29008 bp Feature: domain Description: GIIM Note: maturase Location: 29062-29293 bp Feature: domain Description: GIIM Note: maturase Location: 29062-29293 bp Feature: gene Location: 29752-29940 bp Feature: gene Location: 29986-30135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSVA01000004.1 Bacteroides uniformis strain OM03-4 OM03-4.Scaf4, whole genome shotgun sequence (272917 bp)
Overview 1 RT 1: 194943-200305 bp 2 RT 2: 232070-233613 bp Neighborhood of RT #1 [194943, 200319] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #2 [232070, 233613] HTH_28 RVT-GII Feature: gene Location: 194943-195575 bp Feature: domain Description: DUF4141 Location: 194967-195114 bp Feature: domain Description: DUF4141 Location: 194967-195114 bp Feature: gene Location: 195596-196075 bp Feature: domain Description: Bac_Flav_CT_G Location: 195629-196061 bp Feature: domain Description: Bac_Flav_CT_G Location: 19562 9-196061 bp Feature: gene Location: 196132-197943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196396-197218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196396-1972 18 bp Feature: domain Description: Intron_maturas2 Location: 197293-197608 bp Feature: domain Description: Intron_maturas2 Location: 1972 93-197608 bp Feature: domain Description: HNHc Note: nucleases Location: 197764-197914 bp Feature: domain Description: HNHc Note: nucleases Location: 197764-197914 bp Feature: gene Location: 198289-198462 bp Feature: gene Location: 198490-200319 bp Feature: domain Description: Bac_Flav_CT_G Location: 198493-200305 bp Feature: domain Description: Bac_Flav_CT_G Location: 198493-2 00305 bp Feature: gene Location: 232070-232222 bp Feature: gene Location: 232400-232690 bp Feature: domain Description: HTH_28 Location: 232424-232568 bp Feature: domain Description: HTH_2 8 Location: 2 32 42 4-2 32 568 bp Feature: gene Location: 232811-233008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232814-233006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 814-2 33006 bp Feature: gene Location: 233038-233247 bp Feature: gene Location: 233251-233613 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_28 (pfam13518)

Seq: QSVA01000005.1 Bacteroides uniformis strain OM03-4 OM03-4.Scaf5, whole genome shotgun sequence (271387 bp)
Overview 1 RT 1: 169305-173238 bp Neighborhood of RT #1 [169305, 173238] RVT-UG27 Feature: gene Location: 169305-169952 bp Feature: gene Location: 169966-170634 bp Feature: gene Location: 170627-171889 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 170819-171455 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 170819-171455 bp Feature: gene Location: 172212-172709 bp Feature: gene Location: 172759-173238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSVA01000050.1 Bacteroides uniformis strain OM03-4 OM03-4.Scaf50, whole genome shotgun sequence (3239 bp)
Overview 1 RT 1: 3-3217 bp Neighborhood of RT #1 [3, 3237] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N Bac_Flav_CT_N Feature: gene Location: 3-395 bp Feature: domain Description: Bac_Flav_CT_N Location: 129-396 bp Feature: domain Description: Bac_Flav_CT_N Location: 129-396 bp Feature: gene Location: 385-2196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 649-1471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 9-14 71 bp Feature: domain Description: Intron_maturas2 Location: 1540-1849 bp Feature: domain Description: Intron_maturas2 Location: 154 0-184 9 bp Feature: gene Location: 2231-2566 bp Feature: gene Location: 2737-3237 bp Feature: domain Description: Bac_Flav_CT_N Location: 2743-2818 bp Feature: domain Description: Bac_Flav_CT_N Location: 274 3-2818 bp Feature: domain Description: Bac_Flav_CT_N Location: 2953-3217 bp Feature: domain Description: Bac_Flav_CT_N Location: 2953-3217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSVA01000051.1 Bacteroides uniformis strain OM03-4 OM03-4.Scaf51, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 563-2027 bp Neighborhood of RT #1 [563, 2371] RVT-GII Intron_maturas2 Feature: gene Location: 563-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 827-1649 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Feature: domain Description: Intron_maturas2 Location: 1718-2027 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)