myRT

myRT report for GCA_003439275.1_ASM343927v1

Download annotations/find similar RTs

Seq: QSVC01000015.1 Bacteroides vulgatus strain OM03-13AC OM03-13AC.Scaf15, whole genome shotgun sequence (98492 bp)
Overview 1 RT 1: 15496-19597 bp Neighborhood of RT #1 [15496, 19597] DUF4326 TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 15496-16029 bp Feature: domain Description: DUF4326 Location: 15511-15766 bp Feature: domain Description: DUF4326 Location: 1 551 1 -1 5766 bp Feature: gene Location: 16247-17473 bp Feature: domain Description: TraG-D_C Location: 16829-17162 bp Feature: domain Description: TraG-D_C Location: 1 6829-1 71 62 bp Feature: gene Location: 17478-19130 bp Feature: RT Description: RVT_N Location: 17532-17775 bp Feature: RT Description: RVT_N Location: 1 7532-1 7775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17820-18468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 7820-1 8468 bp Feature: domain Description: GIIM Note: maturase Location: 18522-18753 bp Feature: domain Description: GIIM Note: maturase Location: 1 8522-1 8753 bp Feature: gene Location: 19296-19430 bp Feature: gene Location: 19448-19597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4326 (pfam14216), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSVC01000018.1 Bacteroides vulgatus strain OM03-13AC OM03-13AC.Scaf18, whole genome shotgun sequence (83429 bp)
Overview 1 RT 1: 69190-74103 bp Neighborhood of RT #1 [69190, 74141] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 COG3943 HTH_17 Feature: gene Location: 69190-69318 bp Feature: gene Location: 69657-70826 bp Feature: domain Description: Arm-DNA-bind_5 Location: 69687-69942 bp Feature: domain Description: Arm-DNA-bind_5 Location: 69687-69942 bp Feature: domain Description: Phage_int_SAM_5 Location: 69981-70302 bp Feature: domain Description: Phage_int_SAM_5 Location: 69981-70302 bp Feature: domain Description: INTN1_C_like Location: 70341-70809 bp Feature: domain Description: INTN1_C_like Location: 70341-70809 bp Feature: gene Location: 71377-73185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71641-72463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71641-72 463 bp Feature: domain Description: Intron_maturas2 Location: 72586-72841 bp Feature: domain Description: Intron_maturas2 Location: 72 586-72 841 bp Feature: gene Location: 73399-73761 bp Feature: domain Description: COG3943 Location: 73438-73687 bp Feature: domain Description: COG3943 Location: 73438-73687 bp Feature: gene Location: 73839-74141 bp Feature: domain Description: HTH_17 Location: 73974-74103 bp Feature: domain Description: HTH_17 Location: 73974-74103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), COG3943 (Uncharacterized conserved protein ), HTH_17 (pfam12728)

Seq: QSVC01000004.1 Bacteroides vulgatus strain OM03-13AC OM03-13AC.Scaf4, whole genome shotgun sequence (191642 bp)
Overview 1 RT 1: 160068-166275 bp Neighborhood of RT #1 [160068, 166275] Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 160068-161315 bp Feature: domain Description: Relaxase Location: 160188-161088 bp Feature: domain Description: Relaxase Location: 160188-161088 bp Feature: gene Location: 161352-162275 bp Feature: domain Description: YWFCY Location: 161358-161535 bp Feature: domain Description: YWFCY Location: 1613 58-16153 5 bp Feature: gene Location: 162911-164563 bp Feature: RT Description: RVT_N Location: 162965-163208 bp Feature: RT Description: RVT_N Location: 162965-163 208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163253-163901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163 253 -163 901 bp Feature: domain Description: GIIM Note: maturase Location: 163955-164186 bp Feature: domain Description: GIIM Note: maturase Location: 163 955-164186 bp Feature: gene Location: 164568-165797 bp Feature: domain Description: TraG-D_C Location: 165147-165483 bp Feature: domain Description: TraG-D_C Location: 165147-165483 bp Feature: gene Location: 165907-166275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)

Seq: QSVC01000009.1 Bacteroides vulgatus strain OM03-13AC OM03-13AC.Scaf9, whole genome shotgun sequence (134059 bp)
Overview 1 RT 1: 66150-68970 bp Neighborhood of RT #1 [66150, 68970] RVT-DGRs Feature: gene Location: 66150-66383 bp Feature: gene Location: 66405-66662 bp Feature: gene Location: 66759-68060 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66972-67566 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 66972-67566 bp Feature: gene Location: 68093-68542 bp Feature: gene Location: 68728-68970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs