myRT

myRT report for GCA_003439535.1_ASM343953v1

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Seq: QSVU01000010.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf10, whole genome shotgun sequence (192957 bp)
Overview 1 RT 1: 149640-160891 bp 2 RT 2: 168662-174574 bp 3 RT 3: 178282-182914 bp Neighborhood of RT #1 [149640, 161082] ParB_N_like RVT-GII HNHc COG4646 KOG1000 DUF3991 Toprim_2 Neighborhood of RT #2 [168662, 174606] VirD4 RVT-GII HNHc SpoVG Neighborhood of RT #3 [178282, 183252] RVT-GII HNHc CpaF TadB Feature: gene Location: 149640-150749 bp Feature: domain Description: ParB_N_like Location: 149790-150036 bp Feature: domain Description: ParB_N_like Location: 1 49790-1 50036 bp Feature: gene Location: 150733-153072 bp Feature: gene Location: 153751-155622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154072-154807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 54072-1 54807 bp Feature: domain Description: HNHc Note: nucleases Location: 155362-155503 bp Feature: domain Description: HNHc Note: nucleases Location: 1 55362-1 55503 bp Feature: gene Location: 155892-160061 bp Feature: domain Description: COG4646 Location: 156057-158751 bp Feature: domain Description: COG4646 Location: 1 56057-1 58751 bp Feature: domain Description: KOG1000 Location: 159021-159321 bp Feature: domain Description: KOG1 000 Location: 1 59021 -1 59321 bp Feature: gene Location: 160072-161082 bp Feature: domain Description: DUF3991 Location: 160453-160666 bp Feature: domain Description: DUF3991 Location: 1 60453-1 60666 bp Feature: domain Description: Toprim_2 Location: 160711-160891 bp Feature: domain Description: Toprim_2 Location: 1 6071 1 -1 60891 bp Feature: gene Location: 168662-170914 bp Feature: domain Description: VirD4 Location: 169391-170630 bp Feature: domain Description: VirD4 Location: 1 69391 -1 70630 bp Feature: gene Location: 170886-171170 bp Feature: gene Location: 171925-173796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172240-172966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72240-1 72966 bp Feature: domain Description: HNHc Note: nucleases Location: 173518-173686 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7351 8-1 73686 bp Feature: gene Location: 174057-174308 bp Feature: gene Location: 174322-174606 bp Feature: domain Description: SpoVG Location: 174349-174574 bp Feature: domain Description: SpoVG Location: 1 74349-1 74574 bp Feature: gene Location: 178282-178608 bp Feature: gene Location: 178699-178839 bp Feature: gene Location: 179375-181168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179657-180356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 79657-1 80356 bp Feature: domain Description: HNHc Note: nucleases Location: 180905-181046 bp Feature: domain Description: HNHc Note: nucleases Location: 1 80905-1 81 046 bp Feature: gene Location: 181217-182323 bp Feature: domain Description: CpaF Location: 181277-182174 bp Feature: domain Description: CpaF Location: 1 81 277-1 821 74 bp Feature: gene Location: 182320-183252 bp Feature: domain Description: TadB Location: 182476-182914 bp Feature: domain Description: TadB Location: 1 82476-1 8291 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ParB_N_like (cd16411), RVT-GII, HNHc (smart00507), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3991 (pfam13154), Toprim_2 (pfam13155), VirD4 (COG3505), SpoVG (pfam04026), CpaF (COG4962)
TadB (COG4965)

Seq: QSVU01000100.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf100, whole genome shotgun sequence (2538 bp)
Overview 1 RT 1: 249-2101 bp Neighborhood of RT #1 [249, 2421] RVT-GII Intron_maturas2 Feature: gene Location: 249-437 bp Feature: gene Location: 610-2421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874-1705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874-1705 bp Feature: domain Description: Intron_maturas2 Location: 1774-2101 bp Feature: domain Description: Intron_maturas2 Location: 1774-2 101 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSVU01000101.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf101, whole genome shotgun sequence (2521 bp)
Overview 1 RT 1: 1-2064 bp Neighborhood of RT #1 [1, 2408] RVT-GII Intron_maturas2 Feature: gene Location: 1-165 bp Feature: gene Location: 591-2408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855-1686 bp Feature: domain Description: Intron_maturas2 Location: 1758-2064 bp Feature: domain Description: Intron_maturas2 Location: 1758-2064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QSVU01000019.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf19, whole genome shotgun sequence (125496 bp)
Overview 1 RT 1: 215-5497 bp 2 RT 2: 110446-115467 bp Neighborhood of RT #1 [215, 5589] Virulence_RhuM RVT-Retrons DDE_Tnp_IS66 Neighborhood of RT #2 [110446, 115467] PRK06545 PRK14806 RVT-Retrons DUF2871 Feature: gene Location: 215-1258 bp Feature: domain Description: Virulence_RhuM Location: 440-1190 bp Feature: domain Description: Virulence_RhuM Location: 4 4 0-1190 bp Feature: gene Location: 1827-2333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1836-2103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1836-2103 bp Feature: gene Location: 2734-3702 bp Feature: gene Location: 4048-5589 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4690-5497 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4 690-54 97 bp Feature: gene Location: 110446-111543 bp Feature: domain Description: PRK06545 Location: 110461-111517 bp Feature: domain Description: PRK0654 5 Location: 1104 61-111517 bp Feature: gene Location: 111568-112845 bp Feature: domain Description: PRK14806 Location: 111580-112822 bp Feature: domain Description: PRK14 806 Location: 111580-112822 bp Feature: gene Location: 112991-114001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113156-113711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113156-113711 bp Feature: gene Location: 114345-114788 bp Feature: domain Description: DUF2871 Location: 114381-114771 bp Feature: domain Description: DUF2871 Location: 114 381-114 771 bp Feature: gene Location: 114790-115467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Virulence_RhuM (pfam13310), DDE_Tnp_IS66 (pfam03050), PRK06545 (prephenate dehydrogenase; Validated), PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional), DUF2871 (pfam11070)

Seq: QSVU01000024.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf24, whole genome shotgun sequence (106659 bp)
Overview 1 RT 1: 66701-69320 bp Neighborhood of RT #1 [66701, 69320] HTH_16 sigma70-ECF RVT-GII GIIM Feature: gene Location: 66701-66907 bp Feature: domain Description: HTH_16 Location: 66716-66875 bp Feature: domain Description: HTH_16 Location: 66716-66875 bp Feature: gene Location: 66897-67337 bp Feature: domain Description: sigma70-ECF Location: 66921-67311 bp Feature: domain Description: sigma70-ECF Location: 66921-67311 bp Feature: gene Location: 67523-68827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67724-68342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67724-68342 bp Feature: domain Description: GIIM Note: maturase Location: 68396-68609 bp Feature: domain Description: GIIM Note: maturase Location: 68396-68609 bp Feature: gene Location: 68859-69017 bp Feature: gene Location: 69183-69320 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_16 (pfam12645), sigma70-ECF (TIGR02937), RVT-GII, GIIM (pfam08388)

Seq: QSVU01000027.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf27, whole genome shotgun sequence (88103 bp)
Overview 1 RT 1: 45376-48599 bp Neighborhood of RT #1 [45376, 48599] YvbJ RVT-GII GIIM Feature: gene Location: 45376-45738 bp Feature: domain Description: YvbJ Location: 45517-45724 bp Feature: domain Description: YvbJ Location: 45517-45724 bp Feature: gene Location: 45752-46018 bp Feature: gene Location: 46306-47589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46510-47125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 510-47125 bp Feature: domain Description: GIIM Note: maturase Location: 47185-47416 bp Feature: domain Description: GIIM Note: maturase Location: 47185-47416 bp Feature: gene Location: 47666-48304 bp Feature: gene Location: 48363-48599 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YvbJ (COG4640), RVT-GII, GIIM (pfam08388)

Seq: QSVU01000032.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf32, whole genome shotgun sequence (72427 bp)
Overview 1 RT 1: 17621-23912 bp Neighborhood of RT #1 [17621, 24013] UgpE RVT-GII LacZ AAA-ATPase_like PDDEXK_9 Feature: gene Location: 17621-18451 bp Feature: domain Description: UgpE Location: 17633-18446 bp Feature: domain Description: UgpE Location: 17 633-18446 bp Feature: gene Location: 18716-18889 bp Feature: gene Location: 18939-20237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19194-19884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19194-19884 bp Feature: gene Location: 20366-22240 bp Feature: domain Description: LacZ Location: 20444-21629 bp Feature: domain Description: LacZ Location: 20444-21629 bp Feature: gene Location: 22379-24013 bp Feature: domain Description: AAA-ATPase_like Location: 22451-23261 bp Feature: domain Description: AAA-ATPase_like Location: 22451-23261 bp Feature: domain Description: PDDEXK_9 Location: 23720-23912 bp Feature: domain Description: PDDEXK_9 Location: 237 20-23912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), RVT-GII, LacZ (COG3250), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: QSVU01000069.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf69, whole genome shotgun sequence (23171 bp)
Overview 1 RT 1: 27-3789 bp Neighborhood of RT #1 [27, 3789] T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc Feature: gene Location: 27-821 bp Feature: domain Description: T4SS-DNA_transf Location: 69-810 bp Feature: domain Description: T4SS-DNA_transf Location: 69-8 10 bp Feature: gene Location: 912-2729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1176-1995 bp Feature: domain Description: Intron_maturas2 Location: 2067-2370 bp Feature: domain Description: Intron_maturas2 Location: 2067-2370 bp Feature: domain Description: HNHc Note: nucleases Location: 2550-2694 bp Feature: domain Description: HNHc Note: nucleases Location: 2550-2694 bp Feature: gene Location: 3016-3156 bp Feature: gene Location: 3289-3789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSVU01000099.1 Hungatella hathewayi strain OM02-1 OM02-1.Scaf99, whole genome shotgun sequence (2696 bp)
Overview 1 RT 1: 757-1756 bp Neighborhood of RT #1 [757, 2583] RVT-GII Feature: gene Location: 757-2583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII