myRT

myRT report for GCA_003439715.1_ASM343971v1

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Seq: QSUY01000011.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf11, whole genome shotgun sequence (111810 bp)
Overview 1 RT 1: 63685-66276 bp Neighborhood of RT #1 [63685, 66320] COG3943 RVT-GII HTH_17 Feature: gene Location: 63685-64050 bp Feature: domain Description: COG3943 Location: 63730-63994 bp Feature: domain Description: COG3943 Location: 63730-63994 bp Feature: gene Location: 64072-64293 bp Feature: gene Location: 64512-65231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64848-65223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64848-65223 bp Feature: gene Location: 65393-65833 bp Feature: gene Location: 66003-66320 bp Feature: domain Description: HTH_17 Location: 66135-66276 bp Feature: domain Description: HTH_1 7 Location: 661 35-66276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-GII, HTH_17 (pfam12728)

Seq: QSUY01000112.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf112, whole genome shotgun sequence (4905 bp)
Overview 1 RT 1: 282-3348 bp Neighborhood of RT #1 [282, 3392] DUF4134 RVT_N RVT-GII GIIM DUF4134 DUF4133 Feature: gene Location: 282-539 bp Feature: domain Description: DUF4134 Location: 345-525 bp Feature: domain Description: DUF4134 Location: 345-52 5 bp Feature: gene Location: 664-873 bp Feature: gene Location: 1155-2810 bp Feature: domain Description: RVT_N Location: 1212-1449 bp Feature: domain Description: RVT_N Location: 12 12 -1449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500-2148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1500-2 148 bp Feature: domain Description: GIIM Note: maturase Location: 2205-2436 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 05-2 436 bp Feature: gene Location: 2807-3049 bp Feature: domain Description: DUF4134 Location: 2954-3044 bp Feature: domain Description: DUF4134 Location: 2 954-3044 bp Feature: gene Location: 3060-3392 bp Feature: domain Description: DUF4133 Location: 3078-3348 bp Feature: domain Description: DUF4133 Location: 3078-3348 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571)

Seq: QSUY01000159.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf159, whole genome shotgun sequence (909 bp)
Overview 1 RT 1: 2-869 bp Neighborhood of RT #1 [2, 907] RVT_N RVT-GII Feature: gene Location: 2-907 bp Feature: domain Description: RVT_N Location: 5-176 bp Feature: domain Description: RVT_N Location: 5-176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QSUY01000160.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf160, whole genome shotgun sequence (909 bp)
Overview 1 RT 1: 2-869 bp Neighborhood of RT #1 [2, 907] RVT_N RVT-GII Feature: gene Location: 2-907 bp Feature: domain Description: RVT_N Location: 5-176 bp Feature: domain Description: RVT_N Location: 5-176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221-869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QSUY01000175.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf175, whole genome shotgun sequence (739 bp)
Overview 1 RT 1: 8-359 bp Neighborhood of RT #1 [8, 736] RVT-GII GIIM Feature: gene Location: 8-736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-74 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-74 bp Feature: domain Description: GIIM Note: maturase Location: 128-359 bp Feature: domain Description: GIIM Note: maturase Location: 128-35 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QSUY01000020.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf20, whole genome shotgun sequence (75621 bp)
Overview 1 RT 1: 65107-69118 bp Neighborhood of RT #1 [65107, 69180] Bac_Flav_CT_K Bac_Flav_CT_J RVT_N RVT-GII GIIM Bac_Flav_CT_J Feature: gene Location: 65107-65730 bp Feature: domain Description: Bac_Flav_CT_K Location: 65125-65728 bp Feature: domain Description: Bac_Flav_CT_K Location: 6 5125-6 5728 bp Feature: gene Location: 65751-65927 bp Feature: domain Description: Bac_Flav_CT_J Location: 65772-65916 bp Feature: domain Description: Bac_Flav_CT_J Location: 6 5772-6 5916 bp Feature: gene Location: 66005-67687 bp Feature: domain Description: RVT_N Location: 66059-66302 bp Feature: domain Description: RVT_N Location: 6 6 059-6 6 302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 66347-67004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 6 347-6 7004 bp Feature: domain Description: GIIM Note: maturase Location: 67055-67289 bp Feature: domain Description: GIIM Note: maturase Location: 6 7055-6 7289 bp Feature: gene Location: 67797-68081 bp Feature: gene Location: 68272-69180 bp Feature: domain Description: Bac_Flav_CT_J Location: 68299-69118 bp Feature: domain Description: Bac_Flav_CT_J Location: 6 8299-6 9118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_K (TIGR03781), Bac_Flav_CT_J (TIGR03782), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSUY01000022.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf22, whole genome shotgun sequence (71192 bp)
Overview 1 RT 1: 20267-22996 bp Neighborhood of RT #1 [20267, 22996] DUF1566 RVT-DGRs MutS_I Feature: gene Location: 20267-20473 bp Feature: domain Description: DUF1566 Location: 20309-20444 bp Feature: domain Description: DUF1566 Location: 20309-20444 bp Feature: gene Location: 20492-20650 bp Feature: gene Location: 20714-21754 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20720-21410 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 207 20-21410 bp Feature: gene Location: 21751-22227 bp Feature: domain Description: MutS_I Location: 21802-21997 bp Feature: domain Description: MutS_I Location: 21802-21997 bp Feature: gene Location: 22229-22996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, MutS_I (pfam01624)

Seq: QSUY01000004.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf4, whole genome shotgun sequence (179812 bp)
Overview 1 RT 1: 111436-114642 bp Neighborhood of RT #1 [111436, 114642] RVT-UG27 RVT-UG27 Feature: gene Location: 111436-111714 bp Feature: gene Location: 111744-112010 bp Feature: gene Location: 112060-112764 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 112063-112330 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 112063-112330 bp Feature: gene Location: 112821-113321 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 113013-113319 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 113013-113319 bp Feature: gene Location: 113338-113862 bp Feature: gene Location: 113995-114642 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QSUY01000045.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf45, whole genome shotgun sequence (41710 bp)
Overview 1 RT 1: 14573-20199 bp Neighborhood of RT #1 [14573, 20210] RVT-GII Intron_maturas2 Toprim_2 COG2865 Feature: gene Location: 14573-15265 bp Feature: gene Location: 15329-15511 bp Feature: gene Location: 16059-17867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16323-17145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16323-17145 bp Feature: domain Description: Intron_maturas2 Location: 17214-17523 bp Feature: domain Description: Intron_maturas2 Location: 17214-17523 bp Feature: gene Location: 17839-18693 bp Feature: domain Description: Toprim_2 Location: 18391-18670 bp Feature: domain Description: Toprim_2 Location: 1839 1-18670 bp Feature: gene Location: 18774-20210 bp Feature: domain Description: COG2865 Location: 18777-20199 bp Feature: domain Description: COG2865 Location: 18777-2019 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155), COG2865 (Predicted transcriptional regulator, contains HTH domain )

Seq: QSUY01000058.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf58, whole genome shotgun sequence (30281 bp)
Overview 1 RT 1: 53-11442 bp Neighborhood of RT #1 [53, 11510] DUF1896 N6_Mtase N6_Mtase COG4646 matK RVT-GII Intron_maturas2 COG4646 Helicase_C PRK13351 Feature: gene Location: 53-640 bp Feature: domain Description: DUF1896 Location: 218-638 bp Feature: domain Description: DUF1896 Location: 218-638 bp Feature: gene Location: 630-3773 bp Feature: domain Description: N6_Mtase Location: 942-1050 bp Feature: domain Description: N6_Mtase Location: 942-10 50 bp Feature: domain Description: N6_Mtase Location: 1188-1545 bp Feature: domain Description: N6_Mtase Location: 1188-1545 bp Feature: domain Description: COG4646 Location: 2874-3705 bp Feature: domain Description: COG4646 Location: 2874-3705 bp Feature: gene Location: 4373-6175 bp Feature: domain Description: matK Location: 4442-4529 bp Feature: domain Description: matK Location: 4442-4529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4637-5459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4637-5459 bp Feature: domain Description: Intron_maturas2 Location: 5609-5843 bp Feature: domain Description: Intron_maturas2 Location: 5609-5843 bp Feature: gene Location: 6162-8927 bp Feature: domain Description: COG4646 Location: 6276-7416 bp Feature: domain Description: COG4646 Location: 6276-7416 bp Feature: domain Description: Helicase_C Location: 7629-7827 bp Feature: domain Description: Helicase_C Location: 7629-7827 bp Feature: gene Location: 9585-11510 bp Feature: domain Description: PRK13351 Location: 9588-11442 bp Feature: domain Description: PRK13351 Location: 9588-11442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), Helicase_C (pfam00271), PRK13351 (elongation factor G-like protein)

Seq: QSUY01000062.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf62, whole genome shotgun sequence (25836 bp)
Overview 1 RT 1: 15432-19533 bp Neighborhood of RT #1 [15432, 19533] DUF4326 TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 15432-15965 bp Feature: domain Description: DUF4326 Location: 15447-15702 bp Feature: domain Description: DUF4326 Location: 15447-15702 bp Feature: gene Location: 16183-17409 bp Feature: domain Description: TraG-D_C Location: 16765-17098 bp Feature: domain Description: TraG-D_C Location: 16765-17098 bp Feature: gene Location: 17414-19066 bp Feature: domain Description: RVT_N Location: 17468-17711 bp Feature: domain Description: RVT_N Location: 17468-17711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17756-18404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17756-18404 bp Feature: domain Description: GIIM Note: maturase Location: 18458-18689 bp Feature: domain Description: GIIM Note: maturase Location: 18458-18689 bp Feature: gene Location: 19232-19366 bp Feature: gene Location: 19384-19533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4326 (pfam14216), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QSUY01000069.1 Bacteroides sp. 4_1_36 strain OM03-9 OM03-9.Scaf69, whole genome shotgun sequence (19048 bp)
Overview 1 RT 1: 8608-13641 bp Neighborhood of RT #1 [8608, 13641] DDE_Tnp_1 COG1373 RVT-AbiP2 Hypoth_Ymh Feature: gene Location: 8608-9513 bp Feature: domain Description: DDE_Tnp_1 Location: 8929-9448 bp Feature: domain Description: DDE_Tnp_1 Location: 8929-9448 bp Feature: gene Location: 9643-10902 bp Feature: domain Description: COG1373 Location: 9649-10882 bp Feature: domain Description: COG1373 Location: 9649-10882 bp Feature: gene Location: 10961-12328 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 11390-11846 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 11390-11846 bp Feature: gene Location: 12508-13302 bp Feature: domain Description: Hypoth_Ymh Location: 12925-13279 bp Feature: domain Description: Hypoth_Ymh Location: 12 925-13279 bp Feature: gene Location: 13375-13641 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-AbiP2, Hypoth_Ymh (pfam09509)