myRT

myRT report for GCA_003439735.1_ASM343973v1

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Seq: QSVH01000001.1 Bacteroides sp. 3_1_33FAA strain OM02-4 OM02-4.Scaf1, whole genome shotgun sequence (1077773 bp)
Overview 1 RT 1: 350477-357867 bp 2 RT 2: 386085-392175 bp Neighborhood of RT #1 [350477, 357878] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Neighborhood of RT #2 [386085, 392183] DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 350477-351511 bp Feature: domain Description: dnaG Location: 350564-351467 bp Feature: domain Description: dnaG Location: 350564-351 467 bp Feature: gene Location: 351518-352258 bp Feature: gene Location: 352260-355697 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 352770-353235 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 352770-353235 bp Feature: gene Location: 356134-357339 bp Feature: domain Description: Arm-DNA-bind_5 Location: 356167-356383 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3561 67-356383 bp Feature: domain Description: Phage_int_SAM_5 Location: 356521-356749 bp Feature: domain Description: Phage_int_SAM_5 Location: 356521 -356749 bp Feature: domain Description: INTN1_C_like Location: 356821-357325 bp Feature: domain Description: INTN1 _C_like Location: 356821 -357325 bp Feature: gene Location: 357477-357878 bp Feature: domain Description: HTH_17 Location: 357720-357867 bp Feature: domain Description: HTH_1 7 Location: 357720-357867 bp Feature: gene Location: 386085-386720 bp Feature: domain Description: DUF4141 Location: 386106-386259 bp Feature: domain Description: DUF41 41 Location: 3861 06-386259 bp Feature: gene Location: 386749-387129 bp Feature: domain Description: DUF3876 Location: 386830-387094 bp Feature: domain Description: DUF3876 Location: 386830-387094 bp Feature: gene Location: 387392-389215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387656-388478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387656-388478 bp Feature: domain Description: Intron_maturas2 Location: 388652-388895 bp Feature: domain Description: Intron_maturas2 Location: 388652-388895 bp Feature: domain Description: HNHc Note: nucleases Location: 389006-389177 bp Feature: domain Description: HNHc Note: nucleases Location: 389006-3891 77 bp Feature: gene Location: 389473-389661 bp Feature: gene Location: 389784-392183 bp Feature: domain Description: Bac_Flav_CT_G Location: 389787-392175 bp Feature: domain Description: Bac_Flav_CT_G Location: 389787-3921 75 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728), DUF4141 (pfam13605), DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348)
HNHc (smart00507), Bac_Flav_CT_G (TIGR03783)

Seq: QSVH01000011.1 Bacteroides sp. 3_1_33FAA strain OM02-4 OM02-4.Scaf11, whole genome shotgun sequence (158562 bp)
Overview 1 RT 1: 71415-76427 bp Neighborhood of RT #1 [71415, 76427] RVT-DGRs Feature: gene Location: 71415-72314 bp Feature: gene Location: 72328-73764 bp Feature: gene Location: 74123-75595 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74462-75053 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 74462 -75053 bp Feature: gene Location: 75609-76019 bp Feature: gene Location: 76197-76427 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QSVH01000008.1 Bacteroides sp. 3_1_33FAA strain OM02-4 OM02-4.Scaf8, whole genome shotgun sequence (227666 bp)
Overview 1 RT 1: 114671-118268 bp Neighborhood of RT #1 [114671, 118268] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 114671-115042 bp Feature: domain Description: COG2865 Location: 114755-115019 bp Feature: domain Description: COG2865 Location: 114755-115019 bp Feature: gene Location: 115343-115561 bp Feature: gene Location: 115680-117341 bp Feature: domain Description: RVT_N Location: 115734-115977 bp Feature: domain Description: RVT_N Location: 11573 4-115977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116022-116670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 116022-116670 bp Feature: domain Description: GIIM Note: maturase Location: 116721-116955 bp Feature: domain Description: GIIM Note: maturase Location: 116721-116955 bp Feature: gene Location: 117667-117972 bp Feature: gene Location: 118074-118268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)