myRT

myRT report for GCA_003439835.1_ASM343983v1

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Seq: QSVW01000001.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf1, whole genome shotgun sequence (332383 bp)
Overview 1 RT 1: 3-5129 bp Neighborhood of RT #1 [3, 5134] RVT-GII XerD INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII DUF3837 Feature: gene Location: 3-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 -522 bp Feature: gene Location: 682-1359 bp Feature: domain Description: XerD Location: 1054-1324 bp Feature: domain Description: XerD Location: 1 054-1 324 bp Feature: gene Location: 1536-1916 bp Feature: domain Description: INT_RitA_C_like Location: 1542-1881 bp Feature: domain Description: INT_RitA_C_like Location: 1 542-1 881 bp Feature: gene Location: 1909-2889 bp Feature: domain Description: INT_RitB_C_like Location: 2245-2824 bp Feature: domain Description: INT_RitB_C_like Location: 2245-2824 bp Feature: gene Location: 2876-3886 bp Feature: domain Description: Phage_int_SAM_1 Location: 2921-3173 bp Feature: domain Description: Phage_int_SAM_1 Location: 2921 -31 73 bp Feature: domain Description: INT_RitC_C_like Location: 3254-3806 bp Feature: domain Description: INT_RitC_C_like Location: 3254-3806 bp Feature: gene Location: 3961-4368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4003-4240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4003-4240 bp Feature: gene Location: 4442-4648 bp Feature: gene Location: 4826-5134 bp Feature: domain Description: DUF3837 Location: 4832-5129 bp Feature: domain Description: DUF3837 Location: 4832-51 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, XerD (COG4974), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), DUF3837 (pfam12939)

Seq: QSVW01000103.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf103, whole genome shotgun sequence (3920 bp)
Overview 1 RT 1: 2-3847 bp Neighborhood of RT #1 [2, 3847] VirD4 RVT-GII Feature: gene Location: 2-1141 bp Feature: domain Description: VirD4 Location: 206-1115 bp Feature: domain Description: VirD4 Location: 2 06-1115 bp Feature: gene Location: 1161-1889 bp Feature: gene Location: 1934-2965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2192-2858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 192 -2 858 bp Feature: gene Location: 3668-3847 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII

Seq: QSVW01000011.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf11, whole genome shotgun sequence (152234 bp)
Overview 1 RT 1: 137154-144904 bp Neighborhood of RT #1 [137154, 144981] TrbL AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 137154-139475 bp Feature: domain Description: TrbL Location: 138102-138462 bp Feature: domain Description: TrbL Location: 13 8102-13 8462 bp Feature: gene Location: 139469-140311 bp Feature: domain Description: AAA_10 Location: 139472-140270 bp Feature: domain Description: AAA_10 Location: 13 9472-140270 bp Feature: gene Location: 140529-142355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140829-141528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140829-141528 bp Feature: gene Location: 143052-144605 bp Feature: domain Description: AAA_10 Location: 144384-144570 bp Feature: domain Description: AAA_10 Location: 1443 84-144570 bp Feature: gene Location: 144589-144981 bp Feature: domain Description: TcpE Location: 144607-144904 bp Feature: domain Description: TcpE Location: 144607-144904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbL (pfam04610), AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648)

Seq: QSVW01000111.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf111, whole genome shotgun sequence (2777 bp)
Overview 1 RT 1: 93-2064 bp Neighborhood of RT #1 [93, 2064] RVT-GII HNHc RVT-GII Feature: gene Location: 93-1319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-4 20 bp Feature: domain Description: HNHc Note: nucleases Location: 975-1113 bp Feature: domain Description: HNHc Note: nucleases Location: 975-1113 bp Feature: gene Location: 1376-1903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1550-1889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1550-1889 bp Feature: gene Location: 1936-2064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: QSVW01000115.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf115, whole genome shotgun sequence (2511 bp)
Overview 1 RT 1: 285-2372 bp Neighborhood of RT #1 [285, 2407] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 285-551 bp Feature: gene Location: 590-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 854-1673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85 4-1673 bp Feature: domain Description: Intron_maturas2 Location: 1745-2048 bp Feature: domain Description: Intron_maturas2 Location: 1745 -2048 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2372 bp Feature: domain Description: HNHc Note: nucleases Location: 2228-2372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QSVW01000019.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf19, whole genome shotgun sequence (103806 bp)
Overview 1 RT 1: 1557-6650 bp Neighborhood of RT #1 [1557, 6793] Spr RVT-GII Intron_maturas2 DUF4315 DUF4366 Feature: gene Location: 1557-3209 bp Feature: domain Description: Spr Location: 2874-3177 bp Feature: domain Description: Spr Location: 2874-3177 bp Feature: gene Location: 3382-3570 bp Feature: gene Location: 3834-5630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4101-4914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4101-4914 bp Feature: domain Description: Intron_maturas2 Location: 4992-5412 bp Feature: domain Description: Intron_maturas2 Location: 4992-5412 bp Feature: gene Location: 5848-6105 bp Feature: domain Description: DUF4315 Location: 5860-6094 bp Feature: domain Description: DUF4315 Location: 586 0-6 094 bp Feature: gene Location: 6095-6793 bp Feature: domain Description: DUF4366 Location: 6254-6650 bp Feature: domain Description: DUF436 6 Location: 6 254-6 6 50 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spr (COG0791), RVT-GII, Intron_maturas2 (pfam01348), DUF4315 (pfam14193), DUF4366 (pfam14283)

Seq: QSVW01000029.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf29, whole genome shotgun sequence (80284 bp)
Overview 1 RT 1: 74628-77293 bp Neighborhood of RT #1 [74628, 77310] Phage_XkdX RVT-DGRs Phage_holin_5_2 Feature: gene Location: 74628-74771 bp Feature: domain Description: Phage_XkdX Location: 74649-74766 bp Feature: domain Description: Phage_XkdX Location: 7 4649-7 47 66 bp Feature: gene Location: 74768-75253 bp Feature: gene Location: 75465-76661 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 75660-76383 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7 5660-7 6383 bp Feature: gene Location: 76664-77002 bp Feature: gene Location: 77014-77310 bp Feature: domain Description: Phage_holin_5_2 Location: 77062-77293 bp Feature: domain Description: Phage_holin_5_2 Location: 7 7 062-7 7 293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079)

Seq: QSVW01000055.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf55, whole genome shotgun sequence (34421 bp)
Overview 1 RT 1: 3-2178 bp Neighborhood of RT #1 [3, 2222] RVT-GII RVT-GII GIIM HpcH HpcH Feature: gene Location: 3-527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141-522 bp Feature: gene Location: 556-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559-8 23 bp Feature: domain Description: GIIM Note: maturase Location: 904-1123 bp Feature: domain Description: GIIM Note: maturase Location: 904-1123 bp Feature: gene Location: 1480-1848 bp Feature: domain Description: HpcH Location: 1486-1741 bp Feature: domain Description: HpcH Location: 148 6-1741 bp Feature: gene Location: 1953-2222 bp Feature: domain Description: HpcH Location: 1974-2178 bp Feature: domain Description: HpcH Location: 1974-2178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HpcH (COG3836)

Seq: QSVW01000062.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf62, whole genome shotgun sequence (24612 bp)
Overview 1 RT 1: 13052-19783 bp Neighborhood of RT #1 [13052, 19783] DNA_gyraseB gyrB gyrB RVT-GII GIIM RVT-GII DUF5372 PinE Zn_ribbon_recom Recombinase HTH_17 RVT-GII Feature: gene Location: 13052-13312 bp Feature: domain Description: DNA_gyraseB Location: 13058-13295 bp Feature: domain Description: DNA_gyraseB Location: 13058-1329 5 bp Feature: gene Location: 13324-14502 bp Feature: domain Description: gyrB Location: 13909-14062 bp Feature: domain Description: gyrB Location: 139 09 -14062 bp Feature: domain Description: gyrB Location: 14164-14329 bp Feature: domain Description: gyrB Location: 14164-14329 bp Feature: gene Location: 14599-15165 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14605-14701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14605-14701 bp Feature: domain Description: GIIM Note: maturase Location: 14761-14992 bp Feature: domain Description: GIIM Note: maturase Location: 14761-149 9 2 bp Feature: gene Location: 15201-15527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15207-15489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15207-15489 bp Feature: gene Location: 15587-15916 bp Feature: domain Description: DUF5372 Location: 15698-15908 bp Feature: domain Description: DUF5372 Location: 1569 8-159 08 bp Feature: gene Location: 15974-16333 bp Feature: gene Location: 16469-18508 bp Feature: domain Description: PinE Location: 16529-17216 bp Feature: domain Description: PinE Location: 16529 -17216 bp Feature: domain Description: Zn_ribbon_recom Location: 17477-17651 bp Feature: domain Description: Zn_ribbon_recom Location: 17477-17651 bp Feature: domain Description: Recombinase Location: 18188-18296 bp Feature: domain Description: Recombinase Location: 18188-1829 6 bp Feature: domain Description: HTH_17 Location: 18350-18482 bp Feature: domain Description: HTH_17 Location: 18350-18482 bp Feature: gene Location: 18522-18842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18726-18774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18726-18774 bp Feature: gene Location: 19130-19366 bp Feature: gene Location: 19541-19783 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_gyraseB (pfam00204), gyrB (TIGR01059), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), HTH_17 (pfam12728)

Seq: QSVW01000008.1 [Clostridium] bolteae strain OF13-16 OF13-16.Scaf8, whole genome shotgun sequence (181246 bp)
Overview 1 RT 1: 140939-144834 bp Neighborhood of RT #1 [140939, 144839] spoVFB NAT_SF YoaP RVT-Retrons UgpE Feature: gene Location: 140939-141523 bp Feature: domain Description: spoVFB Location: 140942-141512 bp Feature: domain Description: spoVFB Location: 140942-141512 bp Feature: gene Location: 141826-142569 bp Feature: domain Description: NAT_SF Location: 142033-142150 bp Feature: domain Description: NAT_SF Location: 142033-142150 bp Feature: domain Description: YoaP Location: 142432-142558 bp Feature: domain Description: YoaP Location: 142432-142558 bp Feature: gene Location: 142619-143431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142628-143183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 142628-143183 bp Feature: gene Location: 143795-143998 bp Feature: gene Location: 144006-144839 bp Feature: domain Description: UgpE Location: 144021-144834 bp Feature: domain Description: UgpE Location: 144021-144834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spoVFB (PRK08305), NAT_SF (cl17182), YoaP (pfam14268), RVT-Retrons, UgpE (COG0395)